Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4348 ATGGATACGCCAGAGAGAAACCAAATCAACACCGCTCTCTCTAAATTCGAGGATTCACCAGTGTTCAACTATATTAATAATTTGTCTCCTATAAGGCCTGTTAAATCTGCTCATATTACTCAAACTTTCAATTCACTTAGCTTTTCATCTCCTCCGTCTGTTTTTACATCACCACATGTCACCTCTTTCAAGGAGTCTAGATTCCTACGCAGACATAACCCACCGAGCCCATTGAAGCCTAAGGATTCATCTGAAGATGTAAATAAAGTGTATTCAAATGAAGAGGCTCTTGCTGATTCTACACTTTCACATCATAACTCAAGCGAGTTACATGAGAGTGCTGATAAAGGGATTTCAGTAGGAGATGTTTCTATTGAGCTATCTAGCGAACAAACGAAGTTCTCTGATGAGCTACCGCAGGCATTACAATATAATTGTGGTAGTCCTGGCTATGATCCTCCAATTTGTTGTGATGAGGGTAGCACTCTTTTGGAATTGCCCGGTGAAGGTGTGTCTAATGTTGGGTATGTTCAGGAGGAAGGTTGTAAAAATGATTTGGATGAGCCTGAATTACATCTTCAAGGAACAAGTCCGATTGATCCAAAGGGTGAAGGCTCAGACTGTGGTTGGGATGGTTTAATTCACAATGGTGCTGATATGTTAATTGAAGCAGAAGCTTTTAAGGGTCTAATCCAGAAACCATTGGGATCTTCTATAAGACTTTGTGATTTTGTGCCCCTTCAGCAATCTGCCAGTAATAGTGATCAGAAAATGCACATGGTTGATTCAGCCGCTTCTGGTTCTGAACATGAAATTGAAAATCATTGTTCTGAGCTAGTTGTCACGGCAGACACCGACCAGACACAGGACAATCTTGCTAATGGTTCTTTCATGACTAGCAATCCAAATGAGAAAATGGACCATACACAGGACAATGTTGCTAATGGTTCTTTCATGACTAGCAATCCAAATGGGAAAATGGACAATCAGCTTGTTTCTGTCACGCACCGTGGTATCCGGAGGCGCTGTCTTGACTTTGAGATGGCTGGTGTACGAAAGAACTCTGATGATAATTCAAACACTGGCTCTAGTACAACACAGTCTGAAGTAAGGAATTCTGCTGATGAAAAACAACTGCTCCCTGCAAAACGCAGTGCAAATTCACAAAAGTGCATTTTACCAGGTATCGGTTTACACTTGAATGCACTTGCTCCCTTAAAGGATGGCACAGGAATACAAAACAGAAATTTAACTTCTGGAAGACAACTCAGTCTCACCAACTCTACTTCGTTGCTACTCTCTGCGTGCCAAGAACATCAGCATCTATCGATTGTATCTGTATCAGTATCTTCTGAAAGAGAATTGGACCTATCAGGTAATGAGGTTCAGCCTGCTGAAGATTCTTCCCTGGTACCAGCTTACATGGCTGACGAAGATTTCAATCTGAATAGCCCCAAAAAGAAAAAGCGTAAGCTAGAGCCAGTTGGAGATACTGAGGGCTGCAAACGCTGTAATTGCAAGAAATCAAAGTGCCTGAAGCTTTACTGTGAGTGTTTTGCTGCTGGTGTCTACTGCATAGAACCCTGCTCCTGTCAGGACTGCTTCAACAAACCTGTTCATGAAGACACAGTTCTTCAAACTCGCAAGCAAATTGAATCTCGCAACCCTCTTGCATTTGCTCCTAAAGTCATCCGAAGTGCTGACTCTGTGCCTGAAATTGGGATTGACCCAAACAAAACTCCAGCTTCCGCACGCCACAAAAGAGGGTGCAACTGCAAGAAATCAAGCTGCCTAAAGAAATATTGTGAATGCTATCAGGGTGGTGTTGGTTGCTCCATTGGCTGCAGATGTGAAGGGTGCAAAAACGCATTTGGTAGAAAGGATGGTTCTACTTCTATAAGGACAGAAGGTGAGACAGAAGAAGAAACAGAAACTAGTGACAAGGGTGTGGAGGAAAAAGCTATTCAGAAAACTGAATTTCAGAATATCGAAGATCATTTGGATTCTTCCATGGCCGCAACACCATTACGGATTTCCAGGCCATTGCTTCAGATGCCCTTTTCATCAAAGGGAAAGCCACCAAGATCTTTTGTTACAACCATCACCGGTTCTGGATATTTTACCAGCCAAAAGCTTGCGAAACCAAATCCTCTTTGGTCTCAATCCAAGTCTTTTCAGACTGTTGCAGACGATGAAATGCCAGAAATTCTTCGTGGTGATAGTTCTCCTATCGCATGCATCAAAACTTCATCTCCAAACGGGAAGAGAATCTCCTCTCCTAACTGTGAAATAAGATCATCTCCTACTCGCAGAGGTGGCAGAAAATTGATATTACAATCTATTCCTTCATTTCCTTCTTTGACCCCTCGCCCTTAG 2376 0.4242 MDTPERNQINTALSKFEDSPVFNYINNLSPIRPVKSAHITQTFNSLSFSSPPSVFTSPHVTSFKESRFLRRHNPPSPLKPKDSSEDVNKVYSNEEALADSTLSHHNSSELHESADKGISVGDVSIELSSEQTKFSDELPQALQYNCGSPGYDPPICCDEGSTLLELPGEGVSNVGYVQEEGCKNDLDEPELHLQGTSPIDPKGEGSDCGWDGLIHNGADMLIEAEAFKGLIQKPLGSSIRLCDFVPLQQSASNSDQKMHMVDSAASGSEHEIENHCSELVVTADTDQTQDNLANGSFMTSNPNEKMDHTQDNVANGSFMTSNPNGKMDNQLVSVTHRGIRRRCLDFEMAGVRKNSDDNSNTGSSTTQSEVRNSADEKQLLPAKRSANSQKCILPGIGLHLNALAPLKDGTGIQNRNLTSGRQLSLTNSTSLLLSACQEHQHLSIVSVSVSSERELDLSGNEVQPAEDSSLVPAYMADEDFNLNSPKKKKRKLEPVGDTEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPVHEDTVLQTRKQIESRNPLAFAPKVIRSADSVPEIGIDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSIGCRCEGCKNAFGRKDGSTSIRTEGETEEETETSDKGVEEKAIQKTEFQNIEDHLDSSMAATPLRISRPLLQMPFSSKGKPPRSFVTTITGSGYFTSQKLAKPNPLWSQSKSFQTVADDEMPEILRGDSSPIACIKTSSPNGKRISSPNCEIRSSPTRRGGRKLILQSIPSFPSLTPRP* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4348 791 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 502 537 IPR005172 -
Psa2g4348 791 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 588 623 IPR005172 -
Psa2g4348 791 MobiDBLite consensus disorder prediction 353 374 - -
Psa2g4348 791 ProSiteProfiles CRC domain profile. 500 625 IPR005172 -
Psa2g4348 791 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 790 IPR044522 GO:0003700
Psa2g4348 791 MobiDBLite consensus disorder prediction 350 383 - -
Psa2g4348 791 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 790 - -
Psa2g4348 791 MobiDBLite consensus disorder prediction 631 649 - -
Psa2g4348 791 SMART CXC_2 585 626 IPR033467 -
Psa2g4348 791 SMART CXC_2 499 540 IPR033467 -
Psa2g4348 791 MobiDBLite consensus disorder prediction 66 86 - -
Psa2g4348 791 MobiDBLite consensus disorder prediction 629 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4348 Psa-Chr2 426797368 426802618 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4348 16 790 CPP Transcription Factor Family AT4G14770 44.431 2.34e-162 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Psa2g4348 TCR 2.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4348 - - mtr:MTR_5g006530 1182.93