Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4304 ATGATGAGGTTGAAGACATATGCTGGTCTTAGTTTGATTGCAACTTTGGCTATTGCATATCATGCATTTAACAGTAGAGGGCAATTTTATCCCGCGATGGTGTATCTTTCGACTTCCAAGATAAGTTTGGTGCTTCTTCTCAATATGGGTTTGGTTATCATGTGTGTTTTGTGGCAATTGACAAAGAAGATATTCTTGGGTTCACTTCGAGAGGCGGAGGTTGATAGGCTTAATGAGCAATCGTGGAGGGAGGTTATGGAGATTCTGTTTGCGATTACTATTTTTAGGCAGGATTTTTCGGTTACGTTCCTTGCCATGGTTACGGCTTTGTTGTTAATTAAGGCTTTGCATTGGTTGGCTCAGAAGAGAGTAGAGTATATTGAGACTACTCCTACCGTGACCATGTTGTCTCATATTCGAATTGTATCTTTTATGGGCTTCCTTCTTCTTATAGATAGCCTTTTCTTATATAATTCTTTGAAGCATTTGATAGATACGTGGCAGGCTTCTGTTTCTCTGTTCTTTGCTTTCGAGTACATGATACTGGCAACAACAACAGTGTCGATTTTTGTAAAATATATTTTCTATGTCAGTGACATGCTTATGGAGGGACAGTGGGAAAAGAAACCAGTCTTCACGTTTTACCTAGAACTTATTAAGGACTTGCTGCACTTGTCCATGTATCTGTGCTTCTTCTTTGTTATTTTTGTAAACTACGGTATTCCCTTGCACCTAATACGGGAGTTGTACGAGACATTTAGGAACTTCAAAGTTCGCATTGCAGATTACATTAGATATCGTAAGATCACTTCAAATATGAATGATCGCTTTCCAGATGCAACCCCCGAAGAGCTTGATGCTAGTGATGCAACATGTATTATCTGTCGTGAAGAGATGACTGCTGCTAAGAAACTTATATGTGGACACCTTTTTCATGTCCATTGCCTCCGATCATGGTTAGAGCGACAACATACTTGCCCAACCTGCAGAGCCTTGGTTGTACCAGCCGAAAATGGAACATCTGTTGCTGGGGGTCAGCAAGGATCACAATCAAATGGTCATCAACAAGGTCAAACCGAGCTTGACAGTGGGGGAGCAACTGATAGTGTGAGTCGCCATCAAGCTAGACTCCAAGCAGCTGCTGCTGCAGCTTCAATATATGAGAAGTCTTATGTTTATCCCTCGGTAACTTATTCTGTACGTATTGATCTTAATGGAGAACAAGCTTCAAGTGAGCAAGCACAACAGAAGTTTCATAACCCTGGTGGGCCAAGAGATGTACCCTTTCCTCCGATGGGACAATCTCTTCCTTCTCAACCATACGCGGCGCCTTCCAATTATGGAGAGAGGATTGGAAATGATCGAAATTCCCGAAAGGTTGTGTTTGAAGCTCATAAACAAATGTTTCAAGAACAGATTGAGATTCTGCAAGAACATATACAGAAACTGGAGACCACCTATGCTGAAGGAAGTGTAGATGGTGGCATGCCATCATCAGCAAGCAGAGACAAGCTTAGCGTTTCCTCGGAGAATCAAGAGGGAGCATAA 1548 0.4186 MMRLKTYAGLSLIATLAIAYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCVLWQLTKKIFLGSLREAEVDRLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPTVTMLSHIRIVSFMGFLLLIDSLFLYNSLKHLIDTWQASVSLFFAFEYMILATTTVSIFVKYIFYVSDMLMEGQWEKKPVFTFYLELIKDLLHLSMYLCFFFVIFVNYGIPLHLIRELYETFRNFKVRIADYIRYRKITSNMNDRFPDATPEELDASDATCIICREEMTAAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPAENGTSVAGGQQGSQSNGHQQGQTELDSGGATDSVSRHQARLQAAAAAASIYEKSYVYPSVTYSVRIDLNGEQASSEQAQQKFHNPGGPRDVPFPPMGQSLPSQPYAAPSNYGERIGNDRNSRKVVFEAHKQMFQEQIEILQEHIQKLETTYAEGSVDGGMPSSASRDKLSVSSENQEGA* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4304 515 MobiDBLite consensus disorder prediction 501 515 - -
Psa2g4304 515 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Psa2g4304 515 SUPERFAMILY RING/U-box 272 336 - -
Psa2g4304 515 SMART ring_2 292 329 IPR001841 -
Psa2g4304 515 Coils Coil 466 486 - -
Psa2g4304 515 CDD RING-H2_synoviolin 289 330 - -
Psa2g4304 515 Pfam Ring finger domain 291 330 IPR001841 -
Psa2g4304 515 PANTHER - 1 363 - -
Psa2g4304 515 MobiDBLite consensus disorder prediction 487 515 - -
Psa2g4304 515 MobiDBLite consensus disorder prediction 340 372 - -
Psa2g4304 515 PANTHER RING ZINC FINGER PROTEIN 1 363 - -
Psa2g4304 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 339 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4304 Psa-Chr2 425590025 425594206 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4304 1 503 C3H Transcription Factor Family AT3G16090 65.370 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4304 K10601 - gmx:100782356 773.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g4304 2 425590025 425594206 Psa2g4304 2 425590025 425594206 ECH