Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4271 ATGAACCTATGCTTGAAGCATTTGCTATCTAAAAAGATTGTGCATTATGTATTCCCCAAACCTTGTACCATGTTACAGAATCTTTATTGCACTTCAACTGCACAACCAGAACAAGCACAAACCATAGCCAGAAACATAAACCCACAAATACACGCTCTCTCTTTACAAGGCAATCTTGAAGAAGCACTTTCACTTGTTTACACTCACCCTTCTCTTTCCCTACAAGACTATGCTTTTCTGTTCCATGCTTGTGCTCAGAAAAAATGGATCCAACAAGGCATGGCATTGCACCATTACATATTTAACAAACACCCCACAATTCAAAATGATCTTTTTCTCACTAATAATCTCTTGAACATGTACTGCAAGTGTGGCCATTTAGATTATGCTCACCGCCTGTTTGATCAAATGCCTAGAAGAAATTTTGTTTCTTGGACGGTTCTCATTTCTGGGTATGCTCAGTTTGGGTTGATCAGAGAGTGTTTTGCTTTATTCTCTGGCATGTTGGCTTGTTTTCGACCCAATGAATTTGCTTTTGCAAGTGTGCTTAGTGCTTGTGAGGAGGGCGATGTCAAATATGGTTTGCAGGTACATGCTGTTGCTTTGAAAATTTCGTTGGATTTCAATGTATATGTTGCAAATGCTCTTATTACAATGTATAGCAAGTGCTCTGTTGGTTTTGATGGAGGCTATGATCAAACTTTGGATGATGCGTGGACTGTGTTCAAGTCAATGGAGTATAGAAATCTTATATCTTGGAATTCAATGATTTCAGGTTTTCAGCTTCGCGGGCTTGGGGACAAAGCTATTGGTCTGTTTGCATATATGTACTGCAATGGAATTGGGTTTAACAGTGCCACATTACTTGGTGTTTTCTCTTCTTTAAGTCAATGCAGTAATACTTTAGATGACATCAACAACACACATCTGAGGAACTGTTTTCAATTGCATTGTCTCACTATTAAAAACGGTCTTATTTCAGAAGTTGAAGTGGTAACTGCATTGGTAAAATCTTATGCAAATCTAGGGAGTCACATTTCTGACTGTTATAGGCTCTTCCTCGATAGAAGTGGCCAACATGATATTGTGTCATGGACTGCTATTATTTCTGTGTTTGCAGAGTGCGACCCTGAGCAGGCTTTCCTTCTTCTCTGTCAACTTCACCGAGAGAATATTGTGTTGGACCGGCATACATTCTCAATCGCCTTAAAAGCTTGCGCCTACTTTGTGACTGAGCAAAATGCAACGGCAGTTCACTCACAAGTAATTAAACACGGGTTTCAGGATGACACAGTTGTTTCAAATGCCTTGGTACATGCTTATGGGAGGTCTGGCTCCTTAGCTTTGTGTGAACAAGTATTTGACGAAATGGGTCGTCATGATTTGGTTTCTTGGAATTCAATGCTCAAGTCTTATGCCATGCATGGTCGAGCTAAAGATGCGGTAGAGCTCTTCAAAAGAATGGATGTCCACCCAGATTCTGCAACCTTCGTTGCACTTCTTGCAGCATGCAGTCACGCTGGACTTGTTGAAGAAGGAGTGGAGATTTTCAACTCTATGACTGAAAGTCATGGTATTTCTCCTCAACTAGATCATTATGCCTGCATGGTTGACCTCTACGGACGAGCTGGGAAGATATTGGAGGCAGAGAAGTTGATAAATAAAATGCCAATGAAACCTGATTCTGTAATTTGGAGTTCATTACTTGGATCTTGCCGGAAGCACGGTGAGGCTGGCTTGGCCAAATTGGCAGCTGATAAGTTTAAAGAGTTAGACCCTAAAAACTCGTTGGCATATATACAAATGTCAAACATATACTCCTCTGGAGGTAGTTTTATTGAAGCTGGCCTTATGAGGAAGGAAATGAGAGACTCTAAAGTGAGAAAAAGACCTGGATTAAGCTGGGTTGAGGTTGGGAAGCAGGTTCATGAGTTCACATCTGGTGGCCAACATCATCCGAAAAGAGCAGCCATATTGAGCCGGCTCGAAACATTGATTGGACAGTTGAAAGAAATGGGCTATGCTCCAGAGATTAGCTCTGCATTGCATGACATTGAAGTGGAGCACATAGAAGACCAATTGTTTCATCACAGTGAGAAGATGGCATTGGTATTTGCTATAATGAATGAAGCAAATTTTCCTGGTGCTGGAAACGTCATTAAAATAATGAAGAATATCCGCATTTGTGTTGATTGTCATAACTTTATGAAATTAGCATCAAAACTGTTTCATAAGGAGATTGTTGTAAGAGATTCGAATCGCTTTCACCATTTCAAATATGGAACATGCTCTTGTAATGACTATTGGTAA 2310 0.403 MNLCLKHLLSKKIVHYVFPKPCTMLQNLYCTSTAQPEQAQTIARNINPQIHALSLQGNLEEALSLVYTHPSLSLQDYAFLFHACAQKKWIQQGMALHHYIFNKHPTIQNDLFLTNNLLNMYCKCGHLDYAHRLFDQMPRRNFVSWTVLISGYAQFGLIRECFALFSGMLACFRPNEFAFASVLSACEEGDVKYGLQVHAVALKISLDFNVYVANALITMYSKCSVGFDGGYDQTLDDAWTVFKSMEYRNLISWNSMISGFQLRGLGDKAIGLFAYMYCNGIGFNSATLLGVFSSLSQCSNTLDDINNTHLRNCFQLHCLTIKNGLISEVEVVTALVKSYANLGSHISDCYRLFLDRSGQHDIVSWTAIISVFAECDPEQAFLLLCQLHRENIVLDRHTFSIALKACAYFVTEQNATAVHSQVIKHGFQDDTVVSNALVHAYGRSGSLALCEQVFDEMGRHDLVSWNSMLKSYAMHGRAKDAVELFKRMDVHPDSATFVALLAACSHAGLVEEGVEIFNSMTESHGISPQLDHYACMVDLYGRAGKILEAEKLINKMPMKPDSVIWSSLLGSCRKHGEAGLAKLAADKFKELDPKNSLAYIQMSNIYSSGGSFIEAGLMRKEMRDSKVRKRPGLSWVEVGKQVHEFTSGGQHHPKRAAILSRLETLIGQLKEMGYAPEISSALHDIEVEHIEDQLFHHSEKMALVFAIMNEANFPGAGNVIKIMKNIRICVDCHNFMKLASKLFHKEIVVRDSNRFHHFKYGTCSCNDYW* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4271 769 Gene3D Tetratricopeptide repeat domain 189 308 IPR011990 GO:0005515
Psa2g4271 769 PANTHER - 43 685 - -
Psa2g4271 769 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 43 685 - -
Psa2g4271 769 Gene3D Tetratricopeptide repeat domain 43 188 IPR011990 GO:0005515
Psa2g4271 769 Gene3D Tetratricopeptide repeat domain 374 520 IPR011990 GO:0005515
Psa2g4271 769 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 460 IPR002885 -
Psa2g4271 769 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 491 IPR002885 -
Psa2g4271 769 Gene3D Tetratricopeptide repeat domain 521 595 IPR011990 GO:0005515
Psa2g4271 769 Pfam PPR repeat 115 142 IPR002885 -
Psa2g4271 769 Pfam PPR repeat 143 169 IPR002885 -
Psa2g4271 769 Pfam PPR repeat 251 281 IPR002885 -
Psa2g4271 769 Pfam PPR repeat 496 523 IPR002885 -
Psa2g4271 769 Pfam PPR repeat 434 460 IPR002885 -
Psa2g4271 769 Pfam PPR repeat 533 557 IPR002885 -
Psa2g4271 769 Pfam PPR repeat 463 488 IPR002885 -
Psa2g4271 769 SUPERFAMILY TPR-like 114 618 IPR011990 GO:0005515
Psa2g4271 769 TIGRFAM PPR: pentatricopeptide repeat domain 463 488 IPR002885 -
Psa2g4271 769 TIGRFAM PPR: pentatricopeptide repeat domain 115 143 IPR002885 -
Psa2g4271 769 TIGRFAM PPR: pentatricopeptide repeat domain 496 528 IPR002885 -
Psa2g4271 769 Pfam DYW family of nucleic acid deaminases 673 769 IPR032867 GO:0008270
Psa2g4271 769 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 144 IPR002885 -
Psa2g4271 769 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 528 IPR002885 -
Psa2g4271 769 Pfam E motif 575 637 IPR046848 -
Psa2g4271 769 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4271 Psa-Chr2 424990793 424993353 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4271 77 769 Glycoside Hydrolase AT3G49170 35.461 6.57e-135 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4271 - - mtr:MTR_5g008260 1355.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g4271 2 424990793 424993353 Psa6g4644 6 404008360 404014152 PCT