Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4264 ATGGAAGAATCAAACATCATGCAACAAAACAACGTTACTGCTTCTCCAACACCGACAACAACATCATACATAGGTGTTCGAAAGAGAAAATGGGGAAAATTTGTATCAGAAATAAGAGAGCCAGGTAAGAAAACCAGAATATGGTTAGGAAGCTATGAAGAACCTCAAATGGCAGCAGCAGCATATGATGTAGCAGCTTTTCACCTCAAAGGACGATCCGCGAGGCTCAATTTTCCTGAATTGGTTGAGAAACTTCCAATGCCAGCAAGTTCTAGAGGTGAGGATATTCGTGTAGCAGCTCAACAGGCAGCATTGCAGTTCAAGAAGAGACCAATATCTGAAGGGGGTGTGAATAGCAATGGAAGTGTTGATGTTCCTGCAGTGAGGGTAGGGCTTTCACCTTCTCAAATTCAAGCTATCAATGAGTGTCCAATGGATTCACCAAATATGTGGATGCAAAGGACAGAAGCAGCACTCATGTTTGGATCATTGGAATTTGATGAATCTAGAAATTATGATGTTTTTGAGTTGAGTGATTGGGAAGAAATTCAGTATGAGTCATTGTGGGACTAG 573 0.4136 MEESNIMQQNNVTASPTPTTTSYIGVRKRKWGKFVSEIREPGKKTRIWLGSYEEPQMAAAAYDVAAFHLKGRSARLNFPELVEKLPMPASSRGEDIRVAAQQAALQFKKRPISEGGVNSNGSVDVPAVRVGLSPSQIQAINECPMDSPNMWMQRTEAALMFGSLEFDESRNYDVFELSDWEEIQYESLWD* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4264 190 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Psa2g4264 190 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Psa2g4264 190 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Psa2g4264 190 PRINTS Ethylene responsive element binding protein signature 61 81 IPR001471 GO:0003700|GO:0006355
Psa2g4264 190 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Psa2g4264 190 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 168 - -
Psa2g4264 190 CDD AP2 23 81 IPR001471 GO:0003700|GO:0006355
Psa2g4264 190 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 3 168 - -
Psa2g4264 190 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Psa2g4264 190 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4264 Psa-Chr2 424867658 424868600 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4264 21 190 AP2-EREBP Transcription Factor Family AT1G71450 50.877 4.63e-50 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa2g4264 AP2 4.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4264 - - cam:101493379 261.922