Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4254 ATGAATTGGAGTACTTCAACAAGTGATGGTAATAGCAACAAGAAGTTTAAGGGAGTTAGACAAAGAAAATGGGGGAAATATGTGTCGGAGATTCGTGTTCCGGGGAGCCAAGAACGTTTATGGTTGGGAACTTATGCTACACCGGAAGCTGCTGCGGTTGCACACGATGTGGCTGTTTATTGTTTGAAGAGACCTTCTACGTTGGAGAAACTCAATTTTCCTGAGATTTTGTCTTGTTATTGTATCCAACAGAGAGATGGTTTGATGTCTCCGAGGTCTGTTCAAAAGGTTGCTTCGGATGTTGCTATGGATGTTGATGCTAGAAACATTGCAACCCAAACAACAACAACAACTACTTTGGATCAATCTCATCATGTGCACAATGTTGTTGCTGGTGGTGATGACGTGTGTTGGTGGGAAGGTTTGGGTGATGATCAAGGAACGGCACAAGTTTCTAGCCAACAAGAAGGCTTGAGCATTTCCATTGAAGATTATCTATAG 501 0.4251 MNWSTSTSDGNSNKKFKGVRQRKWGKYVSEIRVPGSQERLWLGTYATPEAAAVAHDVAVYCLKRPSTLEKLNFPEILSCYCIQQRDGLMSPRSVQKVASDVAMDVDARNIATQTTTTTTLDQSHHVHNVVAGGDDVCWWEGLGDDQGTAQVSSQQEGLSISIEDYL* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4254 166 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 129 - -
Psa2g4254 166 SMART rav1_2 15 80 IPR001471 GO:0003700|GO:0006355
Psa2g4254 166 Pfam AP2 domain 15 63 IPR001471 GO:0003700|GO:0006355
Psa2g4254 166 CDD AP2 14 75 IPR001471 GO:0003700|GO:0006355
Psa2g4254 166 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Psa2g4254 166 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Psa2g4254 166 Gene3D AP2/ERF domain 14 76 IPR036955 GO:0003700|GO:0006355
Psa2g4254 166 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
Psa2g4254 166 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF020 9 129 - -
Psa2g4254 166 ProSiteProfiles AP2/ERF domain profile. 15 74 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4254 Psa-Chr2 424353738 424354238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4254 1 166 AP2-EREBP Transcription Factor Family AT1G22810 43.114 2.63e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa2g4254 AP2 6.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4254 - - mtr:MTR_5g008790 251.136