Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4249 ATGGGGTGCATTTGCTCAAAATATTCTTCAAGCAAAGAAAGAATTGAAGAATATGAAAAAGAATGTGGATGGAATAAATCTTCAGTGCAATTAGTTGCACCTACACAACTAAATGGGGTTGGCATTACCATTACAATGAATGGTGGTAATTATATGCCAAGTTTGGAGAAGGCGTCATCGCAAGTGTTTCAAAGAGTAGAAGAAAAAAACAAGCACTTGGATGATGATAACAAAAGCCAACGTCATAGATGTAAGACAATAAGTTCTGATATTGGTGAAAGAAAGCCAATAATGAGTAGAATACTCAGTGTGCAAAATTTTTCAGGAGACCAATGTGTTGATTCTGGGTGGCCAGTATGGTTGTCTTCAGTTGCAGCTGAGGCTATCAAAGGTTGGGTTCCTAGAAGGGCTGACACTTTTGAAAAATTAGACCAAATTGGACAAGGGGCTTATAGTAGTGTGCATAAAGCTATTGATCGCGAAACTGGTAAATATGTTGCTTTGAAGAAAGTTAGATTCTCAAGTGGAGATGTTGAAAGTGTTCGTTTTATGGCGAGGGAGATCTATATTATGCGTCAGCTTAATCATCCTAATATCCTCAAACTTGAAGGCCTTGTCACATCTAGAACTTCAACTAGTTTGTACCTTGTTTTTGAATACATGGAGCATGACCTTGCTGGATTAGCAGCTAGACCTGGTACCAAGTTTACTGAACCACAGATAAAATGTTACATGAAGCAACTATTAAGTGGGCTAGAACATTGTCATGGCAAGGGTGTGTTACACAGAGACATCAAGGGTTCTAATCTTCTAGTTGACAATAAAGGAAATCTTAAGATTGGAGATTTTGGTCTAGCAACTGTTTATGAACCTAATAGCAAAGTGCCATTGACAAGCCGTGTTGTAACTCTTTGGTATAGAGCACCTGAACTTTTACTAGGTGCGACTGACTATGGTATCGGAATTGACATGTGGAGTGTCGGTTGCATTCTTGCTGAATTGTTGGTGGGCAAGCCTATCATGCCGGGAAGAACAGAGGTGGAACAAATGCACAAAATTTTCAAGCTTTGTGGTTCTCCATCTGAAGAATATTGGCAAAGAACAAAACTTCCGTACGCAACAAGTTTTAAGCCGCAAAACTCTTACCAACGACAAATTGCAAATACGTTTAACAATTTTCCTTCTACTGCATTAACTCTTGTAGATACACTCCTCTCAATGGAACCAGAACAACGAGGATCTGCAACTGCTGCACTTAAGAGTGAGTTTTTCATTACAGATCCTCTACCTTGTGATCCTTCAAGCTTACCAAAGTTTCCGCCAAGTAAAGAGTTCGATGTCAAGCGTCGTGATAAAGAATCAATAAGACAAAAGAATGAAGCAAGTAAAGAACGTGGACCGGGAACTGTTTTAAGAGGAGCAGGAAATACCAAAGCATTAAAAACACCAGAATATAATGGTCGGGGAGATATATCGTTTCAGAGAAAATCAAATACTAAAATGTGTCATCTGAAATATGAATCCCAAGAAGATGAAGAGTCTAATAACAAGTGTGAACCAAGTAGAGCATCCATGCATAATGGCTATACAACATTTATGCACAGTACAACAGGACCATCGTCGTTATGCAACAAGAGACAAGAACCGTATAAGAATAATATTTCAGAATTAAGAACACAAAGGTCTAATGTGAATCAAAAAGCAATAGATTTCTCTATTTCTATTAAAAAGGAACAAGGCATGTCAGGACGAGAATCAGGAATGCCTAAGAAAAATAGAATCCATTGTTCTGGACCATTGATGGCTACAGGTGGCAACATTGATGACATGCTTAGAGAACATGAGCGGTTAATGCAAGATGTTTTTCGTAGTGTTAAGAAAGCCAATCCGTAA 1893 0.3846 MGCICSKYSSSKERIEEYEKECGWNKSSVQLVAPTQLNGVGITITMNGGNYMPSLEKASSQVFQRVEEKNKHLDDDNKSQRHRCKTISSDIGERKPIMSRILSVQNFSGDQCVDSGWPVWLSSVAAEAIKGWVPRRADTFEKLDQIGQGAYSSVHKAIDRETGKYVALKKVRFSSGDVESVRFMAREIYIMRQLNHPNILKLEGLVTSRTSTSLYLVFEYMEHDLAGLAARPGTKFTEPQIKCYMKQLLSGLEHCHGKGVLHRDIKGSNLLVDNKGNLKIGDFGLATVYEPNSKVPLTSRVVTLWYRAPELLLGATDYGIGIDMWSVGCILAELLVGKPIMPGRTEVEQMHKIFKLCGSPSEEYWQRTKLPYATSFKPQNSYQRQIANTFNNFPSTALTLVDTLLSMEPEQRGSATAALKSEFFITDPLPCDPSSLPKFPPSKEFDVKRRDKESIRQKNEASKERGPGTVLRGAGNTKALKTPEYNGRGDISFQRKSNTKMCHLKYESQEDEESNNKCEPSRASMHNGYTTFMHSTTGPSSLCNKRQEPYKNNISELRTQRSNVNQKAIDFSISIKKEQGMSGRESGMPKKNRIHCSGPLMATGGNIDDMLREHERLMQDVFRSVKKANP* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4249 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Psa2g4249 630 Gene3D Phosphorylase Kinase; domain 1 127 222 - -
Psa2g4249 630 SMART serkin_6 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g4249 630 PANTHER CELL DIVISION PROTEIN KINASE 67 625 - -
Psa2g4249 630 ProSitePatterns Protein kinases ATP-binding region signature. 146 169 IPR017441 GO:0005524
Psa2g4249 630 CDD STKc_CDK9_like 140 424 - -
Psa2g4249 630 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 67 625 - -
Psa2g4249 630 SUPERFAMILY Protein kinase-like (PK-like) 133 432 IPR011009 -
Psa2g4249 630 ProSiteProfiles Protein kinase domain profile. 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g4249 630 MobiDBLite consensus disorder prediction 435 479 - -
Psa2g4249 630 Gene3D Transferase(Phosphotransferase) domain 1 223 464 - -
Psa2g4249 630 MobiDBLite consensus disorder prediction 442 465 - -
Psa2g4249 630 Pfam Protein kinase domain 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4249 Psa-Chr2 424264792 424267789 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4249 132 465 Core Cell Cycle Gene Families AT5G10270 52.000 4.39e-119 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Psa2g4249 Pkinase 2.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4249 K08819 - gmx:100817858 839.336