Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4248 ATGCAAGGAACCGCCGCCGACGGAGAAGCTTTGGATTTCGAGCCGGAGGATGATGACTTGATGGACGAAGAAGGTGCTCCTGACGCCGAAGCTTCACCGCCTCATCCCAAACTCAAATCCGCCATCACCGCTGCTTCGAATCTTTCCATTCCCAAAAAGACTAAAGGTCGTGGTTTCCGTCAGGATTCTGATTCTGCCGCTAACCGTAACTCCCGTCTCACCGGTTCTGGTTTTGATACTGTTACTGCGGACGGTGGTCCTGGACCTCAAAGATCCATTGAAGGATGGATTATTTTGGTGACCGGTGTGCATGAGGAAGCTCAAGATGATGATTTGCTAAATGCGTTTGGCGAATATGGAGAGATTAAGAACCTTAACTTGAATCTTGATCGCCGTACTGGTTTTGTCAAAGGTTATGCACTGATTGAATACGAGCGTTCTGAGGAAGCTCGAAATGCAATAGAGAATTTGAATGGATCTGAGCTTCTTACACAAACCATTTATGTTGATTGGGCTTTCAGCAGTGGACCTATTAATGAGTCTGTTAAAAGAAAGAATGCCAGACCACCTCAGCGGCGCTCCAGGAGTCCTCCTCGGAGGAGATATTGA 609 0.4745 MQGTAADGEALDFEPEDDDLMDEEGAPDAEASPPHPKLKSAITAASNLSIPKKTKGRGFRQDSDSAANRNSRLTGSGFDTVTADGGPGPQRSIEGWIILVTGVHEEAQDDDLLNAFGEYGEIKNLNLNLDRRTGFVKGYALIEYERSEEARNAIENLNGSELLTQTIYVDWAFSSGPINESVKRKNARPPQRRSRSPPRRRY* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4248 202 Gene3D - 16 197 IPR012677 -
Psa2g4248 202 PANTHER RNA-BINDING PROTEIN Y14A-LIKE 2 202 - -
Psa2g4248 202 MobiDBLite consensus disorder prediction 1 87 - -
Psa2g4248 202 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 167 IPR000504 GO:0003723
Psa2g4248 202 Coils Coil 202 202 - -
Psa2g4248 202 CDD RRM_RBM8 90 177 IPR033744 GO:0003729
Psa2g4248 202 MobiDBLite consensus disorder prediction 180 202 - -
Psa2g4248 202 MobiDBLite consensus disorder prediction 10 26 - -
Psa2g4248 202 SMART rrm1_1 97 170 IPR000504 GO:0003723
Psa2g4248 202 MobiDBLite consensus disorder prediction 188 202 - -
Psa2g4248 202 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 174 IPR000504 GO:0003723
Psa2g4248 202 PANTHER RNA-BINDING PROTEIN 8A 2 202 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Psa2g4248 202 MobiDBLite consensus disorder prediction 63 78 - -
Psa2g4248 202 PRINTS RNA binding motif protein 8 family signature 48 60 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Psa2g4248 202 PRINTS RNA binding motif protein 8 family signature 87 101 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Psa2g4248 202 PRINTS RNA binding motif protein 8 family signature 143 159 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Psa2g4248 202 PRINTS RNA binding motif protein 8 family signature 161 173 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Psa2g4248 202 SUPERFAMILY RNA-binding domain, RBD 87 200 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4248 53 172 Eukaryotic Initiation Factors Gene Family AT4G34110 30.769 2.19e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4248 K12876 - gmx:100527187 326.635