Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4237 ATGGCTACCTTGAAATTTCCATTCATATTTTCCATATTTCTCTTATTTTTTGACTCAACAAAAAGCAAACATCAAAGTTGTGTAAAGAGATATTGTGGAAACCCTAACTTAGGTCTTCTTTTGGAGTTCCCTTTCATATTAAGAGAACAATATCATAATATCAATAATCAAACTGCTCGATGTGGATACCCAGGGTTTGAAGTTTCTTGCGACCGTTATAAGCAAGCTGTGCTTAAACTCTCAAACGATAGAGAATTTGTAATCAAATCTTTTTCCCTTGAGAGACAAAGAATGTGGATTAGTGGTCCCAATAATTGTCCACCACTTAGGTTTCTCCAAAACATAGACTTCAAAGATGATTCACCTTTCCAATGGGACAACTCTTTTCTTAGTCTTTTTGAGAATGTAACATTTCTCAACTGCAGTACCAATTATGCAAAGGAACCAAATCCAATGGTTGATTATCTTCCAATCATACCATGTTTGAGCAATGAAAATTATTCGATTATGTATACGTTACACTCGCCTCTTAAATCGTGGAATAATTCATGTCATGAGATTGGTTTTGCTAGGGTTCCAGTGAGAGATAATTCACATCAACCATTGGTAATCATGGATGGACTTTACTCTGATGTGTTGCTGCGATGGAACACTCCTTCTTGTGGTTGTGAACCTGATCAGTTTTGTGGCTTTCAAACGGATACCGGTCTTGATGTTACTTGTTTCAATTACAACTACATGACTAATCACCCAGGTGAAAATCCTTCAACTCAAAAGTATAAAAAATTCCACTTTTTTCCAGTAGTATGTGGAATATCAGGAATTTTATTCTTCTTGTGGATATCTTTATCCATATGTAAGGATAGACAACAAAATCAAATCCAACAAAGACAAACAATTACAAACATAGAACCAAATAATCCAGAACCTCCTTGGTTTGTGTTTGGGCTTGATAGATCAAGAATAGAACAATATCCAAAGATTCAGCTAGCAGAAAATGGACAATTACCTAAGTCTATTGACAATGTTTGTTCCATATGTCTTTGTGAATATAAACCTATGGATACATTAAGGAGTATACCCCAATGTAATCATCATTTTCATGCTGATTGTATAGATGTTTGGCTCAAGATGAATGCTACTTGTCCTTTATGTCGAAACCTGCCAGGGTTATGA 1176 0.352 MATLKFPFIFSIFLLFFDSTKSKHQSCVKRYCGNPNLGLLLEFPFILREQYHNINNQTARCGYPGFEVSCDRYKQAVLKLSNDREFVIKSFSLERQRMWISGPNNCPPLRFLQNIDFKDDSPFQWDNSFLSLFENVTFLNCSTNYAKEPNPMVDYLPIIPCLSNENYSIMYTLHSPLKSWNNSCHEIGFARVPVRDNSHQPLVIMDGLYSDVLLRWNTPSCGCEPDQFCGFQTDTGLDVTCFNYNYMTNHPGENPSTQKYKKFHFFPVVCGISGILFFLWISLSICKDRQQNQIQQRQTITNIEPNNPEPPWFVFGLDRSRIEQYPKIQLAENGQLPKSIDNVCSICLCEYKPMDTLRSIPQCNHHFHADCIDVWLKMNATCPLCRNLPGL* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4237 391 CDD RING-H2_PA-TM-RING 343 386 - -
Psa2g4237 391 Pfam Wall-associated receptor kinase galacturonan-binding 27 101 IPR025287 GO:0030247
Psa2g4237 391 Pfam Ring finger domain 343 386 IPR001841 -
Psa2g4237 391 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 6 389 - -
Psa2g4237 391 ProSiteProfiles Zinc finger RING-type profile. 344 386 IPR001841 -
Psa2g4237 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 389 IPR013083 -
Psa2g4237 391 SMART ring_2 344 385 IPR001841 -
Psa2g4237 391 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 389 - -
Psa2g4237 391 SUPERFAMILY RING/U-box 343 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4237 Psa-Chr2 423949285 423950626 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4237 22 390 C3H Transcription Factor Family AT2G46495 33.245 1.04e-43 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4237 - - mtr:MTR_5g009190 443.736