Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4230 ATGTTACATGGAATGGAATCTATGTTTCAAGAAGAAGGGTCTTCATCTGTAACTTGTTCACCTCTACAGTTATTTTCCATGATGTCACTTTCACCTGGTATTGGAGGAATAGGATCTCCTTATCCATGGCTGAGTAGAGAATTGAAATCTGAAGAAAGGGGTTTGTATTTGATTCATTTGTTACTCACTTGTGCAAACCATGTAGCTTCTGGTAGTCTTGAAAATGCAAACACAACACTTGAGCAGATTTCTCAGCTCGCATCTCCTGATGGAGACACTATGCAGAGAATTGCTGCATATTTCACTGAAGCACTTGCTGATAGGATACTCAAAACTTGGCCTGGACTTCACAGAGCCTTGAATTCGACAAGAATTGTTATGCTTTCTGAAGAAATTCTTGTTCAAAAGTACTTTTTTGAGCTTTTCCCTTTCTTGAAAGTGGCTTATATTATGACAAATCAAGCTATTGTTGAATCTATGGAAGGTGAGAAAATGGTCCATATCATTGATCTAAATGCTGCTGAGCCTGCACAATGGATTGCTCTTTTTCAAGTTTTGAGTGCTCGTCCCGAAGGTCCTCCTCATTTGAGAATCACAGGGATTCATCAGCAGAAAGAGGTCTTGGATCAAATGGCTCATAAGCTTTCCGAAGAAGCTGAAAAATTGGATATACCGTTCCAATTCAATCCTGTTGTTAGCAAGCTAGAAAATCTTGATTTCGACAAACTTCGTGTGAAAACCGGGGAAGCGCTTGCAATAAGTTCTATACTGCAATTACATTCTCTTTTGGCTTTGGATGATGAGTCGTCATCCTCAAGGAGAAAAACTCCTATTCTGTCAAGAAACTCAAATGGACTTCACCTTCAAAAGGTCATGCTTATGAACCAAAGCACATCATTAGGGGATTTACTTGAAAAAGATATGGTTAATGGCTATAGTCCAAGTCCCGATTCAGCATCATCATCCTCTTCGCCAGCATCTTCAACTGCTTCAATGAATGCAGAAAGCTTTCTCAACGCCTTGTGGAGTTTATCGCCGAAAGTCATGGTTGTTACCGAACAGGATTCAAATCACAACGGTTCAACTCTAATGGAGCGGCTGCTTGAAGCCCTATATTCTTATGCAGCATTGTTCGATTGTTTGGAATCAACTGTGTCAAGAACATCACTAGAGAGATTAAAGGTTGAGAAAATGCTGTTTGGTGAGGAAATCAAGAACATTATTGCCTGTGAAGGAGCTGAAAGAAAGGAAAGACATGAAAAGCTTGATAAGTGGTTTATGAGACTTGATTTGTGTGGTTTTGGTAATGTGCCTTTAAGCTACTATGGTATGTTACAAGCAAGAAGGTTTCTGCAGAGTTATGGTTGTGAGGGATACAGAATGAGAGAAGAAAATGGATGTGTTGTAATTTGTTGGCAAGATAGGTCATTGTTTTCAACAACAGCTTGGAGAGCTAGGAAGTAA 1464 0.3955 MLHGMESMFQEEGSSSVTCSPLQLFSMMSLSPGIGGIGSPYPWLSRELKSEERGLYLIHLLLTCANHVASGSLENANTTLEQISQLASPDGDTMQRIAAYFTEALADRILKTWPGLHRALNSTRIVMLSEEILVQKYFFELFPFLKVAYIMTNQAIVESMEGEKMVHIIDLNAAEPAQWIALFQVLSARPEGPPHLRITGIHQQKEVLDQMAHKLSEEAEKLDIPFQFNPVVSKLENLDFDKLRVKTGEALAISSILQLHSLLALDDESSSSRRKTPILSRNSNGLHLQKVMLMNQSTSLGDLLEKDMVNGYSPSPDSASSSSSPASSTASMNAESFLNALWSLSPKVMVVTEQDSNHNGSTLMERLLEALYSYAALFDCLESTVSRTSLERLKVEKMLFGEEIKNIIACEGAERKERHEKLDKWFMRLDLCGFGNVPLSYYGMLQARRFLQSYGCEGYRMREENGCVVICWQDRSLFSTTAWRARK* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4230 487 Pfam GRAS domain family 57 484 IPR005202 -
Psa2g4230 487 PANTHER BNAA06G02820D PROTEIN 391 486 IPR030008 GO:0003700|GO:0005634|GO:0009739
Psa2g4230 487 PANTHER BNAA06G02820D PROTEIN 6 273 IPR030008 GO:0003700|GO:0005634|GO:0009739
Psa2g4230 487 PANTHER BNAA06G02820D PROTEIN 335 386 IPR030008 GO:0003700|GO:0005634|GO:0009739
Psa2g4230 487 ProSiteProfiles GRAS family profile. 48 484 IPR005202 -
Psa2g4230 487 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 391 486 IPR005202 -
Psa2g4230 487 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 335 386 IPR005202 -
Psa2g4230 487 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 273 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4230 Psa-Chr2 423760408 423762986 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4230 5 487 GRAS Transcription Factor Family AT1G50420 67.617 0.0 658
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Psa2g4230 GRAS 4.5e-140 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4230 - - tcc:18589932 737.643