Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4219 ATGACTCTGTCACCAACAAAGAAACACACTCACCGCATCAACCTCACCAAAGAAAACACTCCGGACCATCCATTTCCTAAAATAGTCAGAATAACATACACAGACAAAGACGCTACAGACTCCTCCAGCGACGAAGAAGAAGCTTCAAAACATAACCGAACTAAAAAGTTTGTTAACGAGATTATCATAGAGCCATGCCTGAGCGAGAATAACGGCCGTGGCCGCGGCAGCGGCGGCGGAGGCGTTGTTCCGAGGAAGAGGAACAGAACTAGCAGCGGTGGAAAAACAAGAGCTCCGGCAACTCGGCGAGTCACCTCCGGGCAGAAATACAGAGGAGTTAGGCAGAGGCCATGGGGAAAATGGGCGGCAGAGATAAGAGACCCGTCGCGTGGCGTGCGCGTGTGGCTTGGCACGTTTCAAACTGCTGAAGAAGCTGCTATTGTGTACGACAACGCGGCTATTAAGCTGCGTGGTCCCGACGCGCTAACTAATTTTATAACTCCACCTGCCACGTGTCAACAAGTATCCCCCGAAATTGAAATTCCTCCTCAGTTACAGTTACCGATACCGTGTTGTTCATCTTCCGAAGAAGTAGCTGAATCCGTTACAACCGATAAAGAATCTGAATCACTCTTTTCAATTCCAAGTGATATACTATTTGATTTCCAAGGGTCTTCACCGGCGAACGACGAGTTTAACAGCTTCAACAGCTTACCGGAGAACATGTTCTACGGTGATGTTGATTGTTCGGAGTATTTCAATTTCGATTTCGATTTCGGTTTTGAAAGCTTGCATACGCATAAGGATGAAGATTTTTTCCAAGATATCGATGATTTATTTGCTTCAGATGCTCTTGTTGCTCTTTAA 867 0.4648 MTLSPTKKHTHRINLTKENTPDHPFPKIVRITYTDKDATDSSSDEEEASKHNRTKKFVNEIIIEPCLSENNGRGRGSGGGGVVPRKRNRTSSGGKTRAPATRRVTSGQKYRGVRQRPWGKWAAEIRDPSRGVRVWLGTFQTAEEAAIVYDNAAIKLRGPDALTNFITPPATCQQVSPEIEIPPQLQLPIPCCSSSEEVAESVTTDKESESLFSIPSDILFDFQGSSPANDEFNSFNSLPENMFYGDVDCSEYFNFDFDFGFESLHTHKDEDFFQDIDDLFASDALVAL* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4219 288 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 8 283 - -
Psa2g4219 288 MobiDBLite consensus disorder prediction 29 53 - -
Psa2g4219 288 CDD AP2 108 165 IPR001471 GO:0003700|GO:0006355
Psa2g4219 288 Pfam AP2 domain 109 158 IPR001471 GO:0003700|GO:0006355
Psa2g4219 288 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 8 283 - -
Psa2g4219 288 SUPERFAMILY DNA-binding domain 109 165 IPR016177 GO:0003677
Psa2g4219 288 MobiDBLite consensus disorder prediction 1 53 - -
Psa2g4219 288 Gene3D AP2/ERF domain 108 167 IPR036955 GO:0003700|GO:0006355
Psa2g4219 288 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Psa2g4219 288 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Psa2g4219 288 MobiDBLite consensus disorder prediction 68 113 - -
Psa2g4219 288 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700|GO:0006355
Psa2g4219 288 SMART rav1_2 109 172 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4219 Psa-Chr2 423113623 423114582 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4219 1 288 AP2-EREBP Transcription Factor Family AT4G23750 37.931 2.42e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa2g4219 AP2 2.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4219 - - mtr:MTR_5g009620 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g4219 2 423113623 423114582 Psa2g4219 2 423113623 423114582 ECH
Psa2g4219 2 423113623 423114582 Psa7g0637 7 41513907 41514938 PCT