Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4216 ATGAGTTATTACATTTTTCTGTTTTCACTTTACTTCATTGCTTTCTTACTCTGTAATGCAGAACCTCTTGAAGACAAAAAAGCATTGTTAGACTTTGTTACTAAATTACCACCTTCTAGGCCTTTGAACTGGGATTTCAATTCTTCAGTATGTAGTAATTGGAATGGTGTAACTTGTAGTTTAGACGAGTCTCGAATCGTCGCGATTCGATTACCCGGACTTGGATTTAATGGCACAATTCCTCTTAATACTATTAGTAGAATCAAAGGTTTGCAGAAATTGAGTCTTAGATCTAATTTTATAACTGGTTATTTTCCTTCTGATTTTCTTAATTTAAGGAATCTTTCTTTTTTGTATCTTCAGTTCAATGATTTTATAGGTCCTTTGCCTGATTTTGGTGTTTGGAACAATTTATCTGTTGTTGATTTGTCTAATAACCGTTTCAGTGGTGAAATTCCTGATGTAAGCTTGCCTTTGTTGGAACAATTGAATTTGTCTAACAATAATTTACAAGGTGTTGTTCCTGTTTCACTTCGGAGGTTTCCGAATTCGGCGTTTGTTGGAAACAATGTTTCGCTTGCAAGTTGTTCGACGCATTGTTCGAAATCTGAGAAACATGGAAGGGTTGGTGGAACATTAGTGTTGGGAAGTATTGTTGTTGGTGGTTTTTTATGCCTTGCAGCATTCATTGTTTTTATCTATGTTTTGTGTTCTAAAAGGAAAGATGGTGATGTTTTTGATGCGAAGTTGGAGAAAGGAGGGAAAATGTCACCTGAAAAGGTGGTCTCTAGAAACCAAGACGCAAACAATAAGCTTTTTTTCTTTGAGGGGTGTAATTATGCTTTTGATTTGGAGGATTTGTTAAGAGCTTCTGCTGAGGTACTTGGTAAGGGAACATTTGGTGCTGCATACAAGGCTGTACTAGAGGATGCAACCACTGTTGTTGTGAAGAGATTAAAGGAGGTAGCTGTTGGGAAGAAGGATTTTGAGCAACACATGGATGTTGTTGGAAGTCTTAAACATGAGAATGTGGTTGAGCTAAAGGCGTATTATTATTCCAAAGATGAGAAACTTGTTGTATATGAATACTACAATCAGGGTAGCATCTCTGCTTTGTTGCATGGTAAGAGAGGAGAGGAGAAGGTGGCTTTAGATTGGAATTCTCGAATCAAAATAGCTTTAGGTGCTGCACGAGGCCTTGCTCGTATCCATTCTGAAAATGGTGGGAAGCTTATACACGGCAATATCAAATCCTCAAACATCTTTCTCAATGCTAAACAGTATGGTTGTGTGTCTGATCTTGGCCTGGCAACCATAATGAGCTCCGTCTGCCAGCCTGTCTCGCAGGCAGCTGGTTACCGGGCACCAGAAGTTACGGACACCAGAAAAGCAACACGGGCTTCAGATGTTTACAGCTTTGGTGTGGTGTTACTGGAGCTTCTAACTGGGAAATCTCCTATTCATACAACTAGAGGCGATGAGATTGTCCACCTGGTGAGATGGGTTCATTCCGTCGTGAGAGAAGAATGGACGGCTGAAGTATTTGACCTCGAGCTTATGAGATGTCCTAATATAGAAGAAGAGATGGTGGAGATGTTACAGATAGCTATGTCATGTGTTGTAAGGATGCATGATCAAAGACCTACAATGTCAGAAATCGTGAAGATGATTGAGAATGTGAAGCAAATTGATGCAGAGAATCGACCATCATCTGAGAACCAAGTTGAAAGTGAAACACAGCATAAATCATCTCAAGGTGATAGTCCACCTCCTATCAAAGGAGATGAATAA 1791 0.3942 MSYYIFLFSLYFIAFLLCNAEPLEDKKALLDFVTKLPPSRPLNWDFNSSVCSNWNGVTCSLDESRIVAIRLPGLGFNGTIPLNTISRIKGLQKLSLRSNFITGYFPSDFLNLRNLSFLYLQFNDFIGPLPDFGVWNNLSVVDLSNNRFSGEIPDVSLPLLEQLNLSNNNLQGVVPVSLRRFPNSAFVGNNVSLASCSTHCSKSEKHGRVGGTLVLGSIVVGGFLCLAAFIVFIYVLCSKRKDGDVFDAKLEKGGKMSPEKVVSRNQDANNKLFFFEGCNYAFDLEDLLRASAEVLGKGTFGAAYKAVLEDATTVVVKRLKEVAVGKKDFEQHMDVVGSLKHENVVELKAYYYSKDEKLVVYEYYNQGSISALLHGKRGEEKVALDWNSRIKIALGAARGLARIHSENGGKLIHGNIKSSNIFLNAKQYGCVSDLGLATIMSSVCQPVSQAAGYRAPEVTDTRKATRASDVYSFGVVLLELLTGKSPIHTTRGDEIVHLVRWVHSVVREEWTAEVFDLELMRCPNIEEEMVEMLQIAMSCVVRMHDQRPTMSEIVKMIENVKQIDAENRPSSENQVESETQHKSSQGDSPPPIKGDE* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4216 596 Gene3D Ribonuclease Inhibitor 23 202 IPR032675 -
Psa2g4216 596 ProSiteProfiles Protein kinase domain profile. 289 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g4216 596 PANTHER PROTEIN, PUTATIVE-RELATED 16 573 - -
Psa2g4216 596 Pfam Protein kinase domain 292 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g4216 596 MobiDBLite consensus disorder prediction 564 587 - -
Psa2g4216 596 PANTHER OS05G0588300 PROTEIN 16 573 - -
Psa2g4216 596 SUPERFAMILY Protein kinase-like (PK-like) 293 565 IPR011009 -
Psa2g4216 596 Gene3D Transferase(Phosphotransferase) domain 1 365 586 - -
Psa2g4216 596 Pfam Leucine rich repeat N-terminal domain 24 60 IPR013210 -
Psa2g4216 596 SUPERFAMILY L domain-like 35 184 - -
Psa2g4216 596 MobiDBLite consensus disorder prediction 563 596 - -
Psa2g4216 596 ProSitePatterns Protein kinases ATP-binding region signature. 295 326 IPR017441 GO:0005524
Psa2g4216 596 Gene3D Phosphorylase Kinase; domain 1 243 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4216 Psa-Chr2 423069802 423072981 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4216 18 583 Receptor kinase-like Gene Family AT4G23740 57.997 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Psa2g4216 Pkinase 5.6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4216 - - gmx:100804799 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g4216 2 423069802 423072981 Psa2g4216 2 423069802 423072981 ECH
Psa2g4216 2 423069802 423072981 Psa7g0639 7 41760650 41764855 PCT