Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4206 ATGTCTTTCAACGATCCTTTCAATTTCATTGACGTAGTTGATCAGGATTTCAACTATTCTCTACACCCTTTTTCTTTCTCTTCCTCAACTACAAATGCTCCTAATACAAACACTGAGCTTGAAGATTATCGTAATAACACACTCATGGATTCCTCCAATTTTCAATGGCAGGAATTGAACTCCTCCGAAAATAGTTTCTTCACCGGACAAATAACAAGGGCAAGCAGTGCAGGTGATTCTCCAACGGAGGAAGCAAACTTGTTGAAAGTAGGACGTTACAGTGTAGAAGAAAGAAAACAAAAAATCTCTAAATACAGAGCCAAGAGAAAACAGAGGAAGTTCAACAAGATTATTAAGTATGAATGTCGAAAGACACTAGCCGACAATAGAACGCGCATACGTGGCAGATTTGCGCGTAACAATGAGACCAGTGAGATTCCAAAAACTCCATGTTCAAATATACAAGACTATGAAGATGAATTATGGGTTGATCTGATTGAAGGATTAAATGAAGATCACACAGCATATTTTTATTTAAGCTGA 543 0.3738 MSFNDPFNFIDVVDQDFNYSLHPFSFSSSTTNAPNTNTELEDYRNNTLMDSSNFQWQELNSSENSFFTGQITRASSAGDSPTEEANLLKVGRYSVEERKQKISKYRAKRKQRKFNKIIKYECRKTLADNRTRIRGRFARNNETSEIPKTPCSNIQDYEDELWVDLIEGLNEDHTAYFYLS* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4206 180 Pfam CCT motif 98 140 IPR010402 GO:0005515
Psa2g4206 180 PANTHER CCT MOTIF FAMILY PROTEIN 25 175 - -
Psa2g4206 180 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 25 175 IPR045281 GO:0009909
Psa2g4206 180 ProSiteProfiles CCT domain profile. 98 140 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4206 Psa-Chr2 422791882 422793178 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4206 74 145 C2C2-CO-like Transcription Factor Family AT5G24930 43.056 4.56e-11 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa2g4206 CCT 5.3e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4206 - - mtr:MTR_5g010120 173.326