Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4179 ATGGGTCATCATTCATGCTGCAATCAACAGAAGGTTAAGAGAGGGCTTTGGTCTCCTGAGGAAGATGAGAAACTCATTAGATACATTACTACTCATGGATATGGATGCTGGAGTGAAGTTCCAGAAAAAGCTGGGCTTCAAAGATGTGGGAAGAGTTGTCGATTGCGATGGATAAATTATTTGAGGCCTGATATTAGAAGAGGAAGATTTACACCTGAGGAAGAGAAGTTAATTATAAGTCTTCATGGAGTTGTTGGCAACAGATGGGCTCACATTGCAAGCCACTTACCTGGTAGAACAGACAATGAAATAAAAAACTATTGGAATTCATGGATCAAGAAGAAAATTAGAAAATCTTCTTCATCTTCTTCTGCTCCTAATTTATCATTTAATACACCACAAACCATTGATCATCATCCTCAGTTCAACTACAGTTCCAATCAACTAGAGAATTACTTTACCAACCAAGAAAATGTAACAACAAAAGAAACCTTATTTTCTTCGACATGTCCTTTATTTATGTTTGACACAACAACAACAGCAACAGATACAAATGTAATAAGACCAGAAGTGTTCTTCCATGATAACATGAGTTTGAACTCAGAAACATGGAACTTGAATCATCATCATCATAATCATGATCATCAAGTTCAGGCACTTCCTCCTCCTCCTCATCCAGCAACAACAGCTTTTACAGCCATTCATGATACTAGTAGTAATTATAATCTGCCACCATTGATAGATAATAATGTGGAAAACATGGTGCCAATTGATCAAGTGCAGTCTTGTAACATGGATGAGGAAGGAGAGATATTAACATTGGAATCATTGCAGTTGCAGAGACATGAGTTGAATGAATGGGTGGAAAATCAACAGCAACAACAATGTTCTAGCTTTCTTTTCTGGGAGAGTGTTGAAGAACCAAACTCATCAAATATTATGGGAACAAGTACAACAAATTCTCTTTCTCCTTTTCCTTCTTCATTATTATGA 993 0.3666 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKSSSSSSAPNLSFNTPQTIDHHPQFNYSSNQLENYFTNQENVTTKETLFSSTCPLFMFDTTTTATDTNVIRPEVFFHDNMSLNSETWNLNHHHHNHDHQVQALPPPPHPATTAFTAIHDTSSNYNLPPLIDNNVENMVPIDQVQSCNMDEEGEILTLESLQLQRHELNEWVENQQQQQCSSFLFWESVEEPNSSNIMGTSTTNSLSPFPSSLL* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4179 330 Coils Coil 274 294 - -
Psa2g4179 330 Gene3D - 6 66 - -
Psa2g4179 330 CDD SANT 17 61 IPR001005 -
Psa2g4179 330 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Psa2g4179 330 CDD SANT 69 111 IPR001005 -
Psa2g4179 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Psa2g4179 330 MobiDBLite consensus disorder prediction 310 330 - -
Psa2g4179 330 Gene3D - 69 135 - -
Psa2g4179 330 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Psa2g4179 330 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Psa2g4179 330 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Psa2g4179 330 SMART sant 13 63 IPR001005 -
Psa2g4179 330 SMART sant 66 114 IPR001005 -
Psa2g4179 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Psa2g4179 330 PANTHER MYB DOMAIN PROTEIN 55 1 318 - -
Psa2g4179 330 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Psa2g4179 330 PANTHER MYB TRANSCRIPTION FACTOR 1 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4179 Psa-Chr2 421820093 421822640 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4179 1 324 MYB Transcription Factor Family AT1G63910 49.319 2.10e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa2g4179 Myb_DNA-binding 5.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4179 K09422 - gmx:100797787 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g4179 2 421820093 421822640 Psa2g4179 2 421820093 421822640 ECH
Psa2g4179 2 421820093 421822640 Psa7g0696 7 47669113 47671276 PCT