Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4172 ATGGCGAAACTATTATCCCTAGCTTGTTTTCGAAACGAAGGATGGCACAATCTCTCTGCTCGATCTCACTATCCCTCCATGCCTTCCTATCCCAAAGGCGAACCCGGTACCACCACTACCACCGCCGCAGTCACCGAGGCTTCCAACGTCACCGGACTTTTCTCCGTTCACGGTATGACTTGCTCCGCTTGCGCCGGATCTGTTGAGAAATCCATCAAACGTCTCCATGGAATTCAGGAAGCTGTAGTTGATGTCCTCAACAACCGTGCTCGCGTCATCTTTCACCCATCGTTTGTTAACGAGGAAGCTATTTGTGAGGCAATTGAAGATGCTGGATTTGAAGCAGCGTTACTAGGGGACGTGAAGAATGATAATTCAATTCAAATATGCCGTATACAAATCAAAGGAATGACATGCACGTCGTGCTCTACTGCAGTTGAATCAGTACTGATCGCCCTCGCCGGAGTAGTTGAAGCTCGAGTAGCTTTAGCGACTGAAGAAGCCAATGTTCATTACAACCCAAACATAATTATCCATAGCCAAATCTTGGAAGCAGTTGATGATGCTGGATTTGAAGCCATTCTTATCAGTTCAAGTGAAGATTTAAGCAAAATAGATCTTCAAGTGGAAGGTGATCTCACCGATCATTCCATGATTAAGCTTATCGAAGATTCTCTTCGATCACTCCCGGGGGTTTTAGAATTACGCCCAAGTCTCGAATTGAGTAAAATATCACTTTCTTATAAACCGGATTTAACAGGACCAAGAGACTTCATCAATGTGATTCAAGAAACTAGTAATGGAAGTTTGAAGGCGAAGATATTTCCGGGCGAAGGAGGAAGAAGAGATGCTCATAGAAACAAGGAAATAAAAAGTTATTATAAATCCTTTTTATGGAGTTTGGTGTTTACTGTTCCAGTTTTTCTTACTTCCATGGTGTTTATGTATATACCTGGAATAAAAGATTTATTGGATAACAAAGTTGTGAAAATGCTAACTATTGGAGAGGTTATTCGTTGGGTGCTTGCAACACCGGTGCAGTTCGTATTCGGGTGGAGATTTTACGTTGGTTCTTATAAATCATTGCGCCGTGGCTCTGCTAATATGGATGTTCTTATTGCTCTTGGAACAAATGCTGCTTATTTCTATTCTGTTTACTCCGTTTTGAGAGCTGCTACTTCTAAGGTTTTTGAAGGCACTGATTTTTTTGAGACTAGTGCAATGCTTATTTCGTTTATTCTCTTAGGGAAGTATCTTGAGATTTTAGCTAAAGGGAAAACATCGAATGCAATTGCTAAGCTCATGAATTTGACACCTGATACTGCTATTTTGTTAAGTTTGGATGGTGATGGCAATGTTATTGGGGAGGAAGAAATTGATAGTAGGTTGGTTCAGAAGAATGATGTGATTAAAATTATTCCTGGTGCAAAAGTAGCATCGGATGGTTTGGTTGTTTGGGGACAGAGTCATGTGAATGAGAGTATGATAACTGGTGAGGCGCGTCCTGTGTCTAAGAGGAAAGATGATACTGTTATTGGTGGAACATTGAATGAAAATGGAGTTTTGCATGTTAAGGCAACAAAAGTTGGTTCGGAAAGTGCTCTTTCACAGATTGTTCGACTTGTTGAGTCTGCTCAAATGGCCAAGGCTCCTGTGCAGAAATTTGCTGATCGCATTTCCACATACTTTGTGCCTTTGGTGATTTTGATCTCATTTTCAACCTGGCTTGCCTGGTTTTTAGCTGGAAAATATCATGCTTACCCGAAATCCTGGATACCTTCTTCCATGGACAGCTTTGAGCTTGCTCTGCAGTTTGGAATATCTGTGATGGTTATTGCCTGCCCTTGTGCTTTGGGTTTAGCCACACCTACTGCTGTTATGGTTGGCACTGGAGTTGGCGCATCTCAGGGTGTTTTGATCAAAGGGGGGCAAGCTTTGGAAAGTGCACATAAGGTAAACTGCATTGTTTTTGACAAGACAGGCACTCTTACTATTGGGAAGCCTGTGATAGTAAATACAAAACTATTGATTAAAATGGTACTCCGTGAGTTCTACGAACTTGTAGCTGCAGCTGAGGTGAACAGTGAGCATCCTCTAGCTAAGGCTGTTGTTGAGTATGCCAAAAAATTTAAAGATGAGGAGAACCCTTCTTGGCCAGAAGCACGTGATTTTGTTTCCATTACTGGACATGGAGTAAAGGCCACCGTTCGTAACAAGGAAATAATGGTGGGTAATAAGAGCTTGTTTACTGACCACAATATTGCAATTCCCGCTGTTGCTGAAGATCTACTTGCGGAAGCTGAAAATTTGGCTCAAACAGGAATTGTAGTATCTATAAATGGAGAAGTAGCCGGGGTTTTAGCAGTATCTGATCCATTGAAATCAGGTGCTCAAGAAGTTATTTCCATTCTCAAGTCTATGAAAATTAAGAGTATCATGGTGACTGGGGACAACTGGGGAACTGCTAATTCTATTGCCAGGGAAGTTGGGATTGAAGATGTTATTGCTGAAGCGAAACCAGATCAGAAAGCAGATAAAGTGAAAAACTTGCAGGCTTCTGGGTACACAGTGGCTATGGTAGGGGATGGCATCAACGATTCACCTGCACTTGTAGCAGCAGACGTTGGAATGGCAATAGGCGCTGGCACAGACATTGCTATTGAGGCAGCTGATATTGTCCTAATGAAGAGCAACTTAGAGGATGTCATAACAGCCATTGACCTTTCCCGAGAAACATTTTCCCGTATACGCCTTAATTATATTTGGGCTTTGGGCTATAATGTGCTTGGCATTCCAATAGCAGCTGGAGTTCTTTTCCCTTCTACAGGCTTTCGATTGCCACCTTGGATTGCTGGAGCTGCTATGGCTGCTTCTTCTGTTAGTGTTGTTTGCTGTTCTCTGTTGTTGAAATATTACAAGAGACCCAAGAAGCTCAACAGCCTTGACATAGGAGCCATAACAATCGAGACATCAAGTGATCCTTTGATCATACACGACGATTGA 3003 0.4222 MAKLLSLACFRNEGWHNLSARSHYPSMPSYPKGEPGTTTTTAAVTEASNVTGLFSVHGMTCSACAGSVEKSIKRLHGIQEAVVDVLNNRARVIFHPSFVNEEAICEAIEDAGFEAALLGDVKNDNSIQICRIQIKGMTCTSCSTAVESVLIALAGVVEARVALATEEANVHYNPNIIIHSQILEAVDDAGFEAILISSSEDLSKIDLQVEGDLTDHSMIKLIEDSLRSLPGVLELRPSLELSKISLSYKPDLTGPRDFINVIQETSNGSLKAKIFPGEGGRRDAHRNKEIKSYYKSFLWSLVFTVPVFLTSMVFMYIPGIKDLLDNKVVKMLTIGEVIRWVLATPVQFVFGWRFYVGSYKSLRRGSANMDVLIALGTNAAYFYSVYSVLRAATSKVFEGTDFFETSAMLISFILLGKYLEILAKGKTSNAIAKLMNLTPDTAILLSLDGDGNVIGEEEIDSRLVQKNDVIKIIPGAKVASDGLVVWGQSHVNESMITGEARPVSKRKDDTVIGGTLNENGVLHVKATKVGSESALSQIVRLVESAQMAKAPVQKFADRISTYFVPLVILISFSTWLAWFLAGKYHAYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTIGKPVIVNTKLLIKMVLREFYELVAAAEVNSEHPLAKAVVEYAKKFKDEENPSWPEARDFVSITGHGVKATVRNKEIMVGNKSLFTDHNIAIPAVAEDLLAEAENLAQTGIVVSINGEVAGVLAVSDPLKSGAQEVISILKSMKIKSIMVTGDNWGTANSIAREVGIEDVIAEAKPDQKADKVKNLQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRETFSRIRLNYIWALGYNVLGIPIAAGVLFPSTGFRLPPWIAGAAMAASSVSVVCCSLLLKYYKRPKKLNSLDIGAITIETSSDPLIIHDD* 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4172 1000 Pfam Heavy-metal-associated domain 54 114 IPR006121 GO:0046872
Psa2g4172 1000 Pfam Heavy-metal-associated domain 132 192 IPR006121 GO:0046872
Psa2g4172 1000 SUPERFAMILY HMA, heavy metal-associated domain 50 119 IPR036163 GO:0046872
Psa2g4172 1000 SUPERFAMILY HMA, heavy metal-associated domain 200 265 IPR036163 GO:0046872
Psa2g4172 1000 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 5 980 - -
Psa2g4172 1000 Pfam E1-E2 ATPase 451 634 - -
Psa2g4172 1000 Gene3D - 127 198 - -
Psa2g4172 1000 SUPERFAMILY Calcium ATPase, transduction domain A 457 542 IPR008250 -
Psa2g4172 1000 ProSitePatterns E1-E2 ATPases phosphorylation site. 658 664 IPR018303 -
Psa2g4172 1000 SFLD p-type atpase 638 911 IPR044492 -
Psa2g4172 1000 SFLD Haloacid Dehalogenase 638 911 - -
Psa2g4172 1000 TIGRFAM TIGR00003: copper ion binding protein 132 193 IPR006122 GO:0005507
Psa2g4172 1000 TIGRFAM TIGR00003: copper ion binding protein 54 115 IPR006122 GO:0005507
Psa2g4172 1000 PANTHER ATP7, ISOFORM B 5 980 - -
Psa2g4172 1000 Gene3D - 623 917 IPR023214 -
Psa2g4172 1000 Gene3D - 49 118 - -
Psa2g4172 1000 ProSiteProfiles Heavy-metal-associated domain profile. 129 195 IPR006121 GO:0046872
Psa2g4172 1000 CDD HMA 132 193 IPR006121 GO:0046872
Psa2g4172 1000 CDD P-type_ATPase_Cu-like 295 970 - -
Psa2g4172 1000 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 409 944 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa2g4172 1000 CDD HMA 54 116 IPR006121 GO:0046872
Psa2g4172 1000 ProSiteProfiles Heavy-metal-associated domain profile. 51 117 IPR006121 GO:0046872
Psa2g4172 1000 ProSitePatterns Heavy-metal-associated domain. 134 163 IPR017969 GO:0046872
Psa2g4172 1000 PRINTS P-type cation-transporting ATPase superfamily signature 492 506 - -
Psa2g4172 1000 PRINTS P-type cation-transporting ATPase superfamily signature 656 670 - -
Psa2g4172 1000 PRINTS P-type cation-transporting ATPase superfamily signature 785 796 - -
Psa2g4172 1000 PRINTS P-type cation-transporting ATPase superfamily signature 807 817 - -
Psa2g4172 1000 PRINTS P-type cation-transporting ATPase superfamily signature 860 879 - -
Psa2g4172 1000 PRINTS P-type cation-transporting ATPase superfamily signature 883 895 - -
Psa2g4172 1000 ProSitePatterns Heavy-metal-associated domain. 56 85 IPR017969 GO:0046872
Psa2g4172 1000 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 369 969 IPR027256 GO:0006812|GO:0016021|GO:0019829
Psa2g4172 1000 SUPERFAMILY Calcium ATPase, transmembrane domain M 401 928 IPR023298 -
Psa2g4172 1000 Pfam haloacid dehalogenase-like hydrolase 652 874 - -
Psa2g4172 1000 PRINTS Copper-transporting ATPase 1 signature 51 76 - -
Psa2g4172 1000 PRINTS Copper-transporting ATPase 1 signature 77 100 - -
Psa2g4172 1000 PRINTS Copper-transporting ATPase 1 signature 106 126 - -
Psa2g4172 1000 PRINTS Copper-transporting ATPase 1 signature 152 173 - -
Psa2g4172 1000 SUPERFAMILY HMA, heavy metal-associated domain 125 199 IPR036163 GO:0046872
Psa2g4172 1000 SUPERFAMILY HAD-like 655 966 IPR036412 -
Psa2g4172 1000 Gene3D - 663 741 IPR023299 GO:0000166
Psa2g4172 1000 Gene3D - 742 791 IPR023299 GO:0000166
Psa2g4172 1000 Gene3D - 424 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4172 Psa-Chr2 421739471 421745334 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4172 3 989 Primary Pumps ATPases AT1G63440 74.197 0.0 1494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4172 K17686 - gmx:100816893 1565.05