Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4171 ATGGTTAAAAAGTTTGAAGGCTGGGAATGCATAAATGGCGGGTTGCATTGCTGCGGGAACCTGTCACCTGAGCCACACTATCCGTCGATAACGAGATACCCGAAAGGAACGTCACCGGAAGTGGTGGAAGGATCAGAGGCTGCCATAACTGTTGTTTTCTGTGTTATGGGAATGACCTGTGCTGCCTGTGCTGGATCCGTGGAGAAAGCCATCAAGCGCTTACCTGGAATTCGAGAAGCAGTTGTTGATGTCTTGAATGATAAAGCTCAGGTTCAATATTATCCCTCCATAGTTAATGAAGATAAGATACGTGAAGCCATTATAGATGTTGGATTTGAAGCCAAATCCATGGGAGAGAGTTCAAATGACACCTCGTTACAGATATGTCGAGTACACATAGGTGGCATGACTTGCACTTCTTGTTCCTCCAATGTCGAATCATCTCTTCAATCCCTTCCCGGGGTGCAAATAGCACAAGTGGCCTTAGCAACAGAAGAAGCAGAAATCCATTACAACCCAAACATCATAAGCTACAATCAAATAATAGAAGCTATTTCAGACACAGGTTTTAAACCTATATTAATAAGCAAAGGAGAACACATTAGTAAAATCGAACTTCAAATCGATGGCATAAAAAATGAACAATCAATGGATATCATTCAACATTCTCTTAGATCACTCCAAGGTGTTGAAACCATAGACACATATCAAGACATTCATAGAGTTACCTTAACTTATAAACCTTATTTAACTGGACCAAGAACCTTTATTGAAGCCATTGAGTCTACAGGATCAGGGTGTTTTAGAGCCACAATATTTTCAAATGATGGAGGAAGTAAAGCACATAAGCGAGACGAAATTAATCGACACTTCAAGTTATTAATATGGAGTTTGGCTTTTACTATTCCTGTTTTTTTGATATCTATGGTTCTTATGTATATACCTGGGATTAAACATGTTTTAGAAATCAAGATTGTTAATATGCTGAATATTGGATTGCTCTTAAAGTGGGAATTTTCGACTCCGGTACAGTTCATCATAGGAAGAAGATTCTATGTTGGAGCTTATAAGGCTTTGAGAAAAGGTTATGCAAACATGGATGTGCTGATAGCTTTGGGAACAAATGCAGCTTATTTCTATTCTGTCTATGTTGTTGGAAGAACGGTTTTTTCTTCGCATTTTAAAGGAAGTGATTTTTTCGAAACAAGTTCTATGCTTATTTCTTTTATTCTACTTGGTAAGTATTTGGAAGTGTTGGCTAAAGGGAGAACATCACAGGCTATTGCAAAACTTATGGATTTGACACCTGATACAGCAATGTTACTAACTCAAGATGATAAGGGAAATGTGATTGGCGAACGGGAGATTGATAGTCGGTTGATACAGAAGAATGATGTGATCAAAGTTGTTCCGGGCGCGAAAGTAGCATCGGATGGTGTTGTTGTGTGGGGACAAAGTCATGTGAACGAGAGTATGATAACCGGCGAGGCAAAGCCTGTTGCTAAGATGAAAGGTGAAATGGTGATTGGTGGTACTGTGAATGAGAATGGCGTTTTGCATGTTAAGGTAACAAGAGTTGGATCAGAAAGTGCACTTTCTCAGATTGTTAGACTTGTTGAGTCTGCTCAAATGGCTAAAGCTCCTGTTCAGAAATTTGCAGACCAGATTTCTAAATACTTTGTTCCTATTGTCGTTGTGATATCTTTTTCAACATGGATTTGTTGGTTTGTAGCGGGAAAGTTGCATACATATCCAAAATCATGGATACCATCCTCAATGAATAGTTTTGAGCTTGCACTTCAGTTTGGAATTTCAGTGATGGTCATAGCATGCCCTTGTGCTCTAGGACTCGCAACTCCTACGGCTGTCATGGTTGGTACCGGAGTTGGTGCTACTCAAGGTGTGTTGATCAAAGGTGGTCAAGCATTAGAAAGTGCACACAAGGTGAATTGCATTGTGTTTGATAAGACAGGAACTCTCACCGTTGGGAAGCCAGTGGTTGTGACTACAAAACTGTTCAAAAACATGTCAGTTAAAGATTTCTATAAATTTGTGGCTGCGGCAGAGGTGAATAGTGAGCATCCAATAGCAAAGGCCATTGTGGATCATGCCAAAAATATCATTGAAGAAGAACAGAATCATTCATTCCCAGAAGCAAAAGACTTTGTGTCTGTTTCAGGACATGGAGTGAAAGCAATTGTTCAAAACAAGGAAATTATAGTTGGGAATAAAAAACTGATGCTAGATCATAACATAGCCATTTCAGTGGAAGCTGAAGAAGTACTAGCCGAAGCTGAAACCATGGCTCAAACTGGGATTGTAGTATCATTGGACGGAGAAGTTGTTGGAGTTGTTGCTGTGTCTGATGCACTGAAACCTAATGCAAAAGAAGTTATATCTATTCTAAAATCCATGAAAATCAGAAGCATAATGGTGACAGGTGATAATTGGGGAACTGCAAATTCTATAGCTAGACAAGTTGGTATTGAAACTGTCATGGCAGAAGCTCAACCCGAGACCAAAGCTACTAAAATAAAAGAATTTCAGAATGCTGGATACACGGTCGGAATGGTGGGAGATGGGATAAATGATTCACCGGCACTAGTGGCAGCTGATGTTGGAATAGCAATTGGTGCTGGAACAGACATAGCTATAGAAGCAGCTGACATTGTTCTGATGAAGAGTAACTTGGAAGATACAATAATAGCCATTGACCTTGCAAAGAAAACTCTGTCGCGCATTCGTTTAAATTATGTTTGGGCTCTTGGCTACAATGTTGTAGCAATTCCTATTGCTGCTGGTGTTCTTTACCCGTCTACAAGATTTCGGTTACCACCTTGGATTGCTGGAGCTGCAATGGCTGCATCTTCTATCAGTGTTGTTTGCTCTTCTCTTTTGTTAAAGAAATATAAGAGACCAAGCATGCTTAAGAAGATGGAGATGAATGGTATTAAGATTGAATAA 2964 0.3971 MVKKFEGWECINGGLHCCGNLSPEPHYPSITRYPKGTSPEVVEGSEAAITVVFCVMGMTCAACAGSVEKAIKRLPGIREAVVDVLNDKAQVQYYPSIVNEDKIREAIIDVGFEAKSMGESSNDTSLQICRVHIGGMTCTSCSSNVESSLQSLPGVQIAQVALATEEAEIHYNPNIISYNQIIEAISDTGFKPILISKGEHISKIELQIDGIKNEQSMDIIQHSLRSLQGVETIDTYQDIHRVTLTYKPYLTGPRTFIEAIESTGSGCFRATIFSNDGGSKAHKRDEINRHFKLLIWSLAFTIPVFLISMVLMYIPGIKHVLEIKIVNMLNIGLLLKWEFSTPVQFIIGRRFYVGAYKALRKGYANMDVLIALGTNAAYFYSVYVVGRTVFSSHFKGSDFFETSSMLISFILLGKYLEVLAKGRTSQAIAKLMDLTPDTAMLLTQDDKGNVIGEREIDSRLIQKNDVIKVVPGAKVASDGVVVWGQSHVNESMITGEAKPVAKMKGEMVIGGTVNENGVLHVKVTRVGSESALSQIVRLVESAQMAKAPVQKFADQISKYFVPIVVVISFSTWICWFVAGKLHTYPKSWIPSSMNSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGATQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVTTKLFKNMSVKDFYKFVAAAEVNSEHPIAKAIVDHAKNIIEEEQNHSFPEAKDFVSVSGHGVKAIVQNKEIIVGNKKLMLDHNIAISVEAEEVLAEAETMAQTGIVVSLDGEVVGVVAVSDALKPNAKEVISILKSMKIRSIMVTGDNWGTANSIARQVGIETVMAEAQPETKATKIKEFQNAGYTVGMVGDGINDSPALVAADVGIAIGAGTDIAIEAADIVLMKSNLEDTIIAIDLAKKTLSRIRLNYVWALGYNVVAIPIAAGVLYPSTRFRLPPWIAGAAMAASSISVVCSSLLLKKYKRPSMLKKMEMNGIKIE* 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4171 987 Pfam Heavy-metal-associated domain 54 112 IPR006121 GO:0046872
Psa2g4171 987 Pfam Heavy-metal-associated domain 131 191 IPR006121 GO:0046872
Psa2g4171 987 Gene3D - 620 915 IPR023214 -
Psa2g4171 987 SUPERFAMILY HAD-like 652 964 IPR036412 -
Psa2g4171 987 CDD P-type_ATPase_Cu-like 294 969 - -
Psa2g4171 987 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 366 967 IPR027256 GO:0006812|GO:0016021|GO:0019829
Psa2g4171 987 ProSiteProfiles Heavy-metal-associated domain profile. 203 264 IPR006121 GO:0046872
Psa2g4171 987 SUPERFAMILY HMA, heavy metal-associated domain 199 267 IPR036163 GO:0046872
Psa2g4171 987 Pfam E1-E2 ATPase 436 631 - -
Psa2g4171 987 Gene3D - 126 196 - -
Psa2g4171 987 ProSitePatterns E1-E2 ATPases phosphorylation site. 655 661 IPR018303 -
Psa2g4171 987 PANTHER ATP7, ISOFORM B 22 978 - -
Psa2g4171 987 SUPERFAMILY HMA, heavy metal-associated domain 48 118 IPR036163 GO:0046872
Psa2g4171 987 CDD HMA 55 115 IPR006121 GO:0046872
Psa2g4171 987 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 22 978 - -
Psa2g4171 987 CDD HMA 133 192 IPR006121 GO:0046872
Psa2g4171 987 Pfam haloacid dehalogenase-like hydrolase 649 872 - -
Psa2g4171 987 Gene3D - 197 272 - -
Psa2g4171 987 SFLD C1.7: P-type atpase like 635 908 - -
Psa2g4171 987 Gene3D - 421 543 - -
Psa2g4171 987 PRINTS Copper-transporting ATPase 1 signature 50 75 - -
Psa2g4171 987 PRINTS Copper-transporting ATPase 1 signature 76 99 - -
Psa2g4171 987 PRINTS Copper-transporting ATPase 1 signature 105 125 - -
Psa2g4171 987 PRINTS Copper-transporting ATPase 1 signature 151 172 - -
Psa2g4171 987 SUPERFAMILY Calcium ATPase, transmembrane domain M 403 645 IPR023298 -
Psa2g4171 987 ProSitePatterns Heavy-metal-associated domain. 133 162 IPR017969 GO:0046872
Psa2g4171 987 Gene3D - 45 116 - -
Psa2g4171 987 ProSitePatterns Heavy-metal-associated domain. 55 84 IPR017969 GO:0046872
Psa2g4171 987 SFLD p-type atpase 635 908 IPR044492 -
Psa2g4171 987 TIGRFAM TIGR00003: copper ion binding protein 53 114 IPR006122 GO:0005507
Psa2g4171 987 Gene3D - 739 789 IPR023299 GO:0000166
Psa2g4171 987 Gene3D - 660 738 IPR023299 GO:0000166
Psa2g4171 987 PRINTS P-type cation-transporting ATPase superfamily signature 489 503 - -
Psa2g4171 987 PRINTS P-type cation-transporting ATPase superfamily signature 653 667 - -
Psa2g4171 987 PRINTS P-type cation-transporting ATPase superfamily signature 783 794 - -
Psa2g4171 987 PRINTS P-type cation-transporting ATPase superfamily signature 805 815 - -
Psa2g4171 987 PRINTS P-type cation-transporting ATPase superfamily signature 858 877 - -
Psa2g4171 987 PRINTS P-type cation-transporting ATPase superfamily signature 881 893 - -
Psa2g4171 987 SUPERFAMILY Calcium ATPase, transduction domain A 453 539 IPR008250 -
Psa2g4171 987 ProSiteProfiles Heavy-metal-associated domain profile. 50 116 IPR006121 GO:0046872
Psa2g4171 987 SUPERFAMILY HMA, heavy metal-associated domain 125 198 IPR036163 GO:0046872
Psa2g4171 987 ProSiteProfiles Heavy-metal-associated domain profile. 128 194 IPR006121 GO:0046872
Psa2g4171 987 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 406 937 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4171 Psa-Chr2 421730645 421738863 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4171 52 987 Primary Pumps ATPases AT1G63440 69.362 0.0 1366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4171 K17686 - gmx:100817431 1495.33