Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4159 ATGGGAAAGGGTAAACCTAGGGCTGTTGAAAAAGGCGTAGTAGGTCCAAATTTGAGCGTTTCATCCACTACTATACCATCTGCGCCTGTGTTTTACCCAACCGAAGATGAATTCAAAGATCCTTTGGAGTTTATTTACAAGATTAGACCCCAAGCTGAACCGTTTGGGATTTGTAGAATTGTTCCTCCTAAGAACTGGAAACCCCCTTTTGCATTGGATCTAGATTCTTTCACTTTTCCAACTAAAACTCAGGCTATTCATAAGCTTCAGGTTCGTCCTGCTGCTTCTGATTCTAAAACTTTTCAGTTGGAGTATTCTAGGTTTTTGAAGGATCATTCTAGTAAGAAGCTTAAGAAGAAAATTGTGTTTGAAGGGGAGGATTTGGATTTGTGTAAGCTTTTTAATGCTGTGAAAAGGTTTGGCGGTTATGATAAGGTTGTGGATGGAAAGAAATGGGGTGAGGTTGCTAGGTTTGTCAACTCTTCCGTGAAGATTTCAGATTGTGCTAAGCATGTCTTGTGTCAGTTGTATAGGGAGCATCTTTATGATTATCAAGTTTTTTGTAACCGGATTAATAAAGGAACGGCGGTCAGTTGTTGTAAGAAAAGTGTGGAGGAAGATTGTAAGAGTGGTCACAGGGTGCAGGTACAAGGTTCGGTGTCCGAGAAGCATCACGGGGTTGTAGATGGTTTGAAAGTTAAGGATCGGAGAGTAAAGGAAGAAAACCGGGATCAGATTTGTGAGCAATGTAAAAGTGGGTTGCATGGGGATGTAATGCTTTTGTGTGATAGGTGTGATAAAGGGTGGCATATTTATTGTCTTTCACCGCCATTGAAGCAAATCCCTCTAGGAAACTGGTATTGTTTTAACTGCTTGAGTTCTGATAGGGACAGTTTTGGTTTTGTGCCTGGGAAGCAATATTCATTGGAAACTTTTAAACGCATTGCGGATAGGTCGAGGAGGAGATGGTTTGGACAGGGACCTGTGTCAAGGGTGCAAATAGAGAAAAAATTCTGGGAGATAGTGGAAGGTTCGGTTGGTGAGGTCGAGGTTATGTATGGAAATGATTTGGATACGTCTCTCTATGGGAGTGGTTTCCCAAATGAAACTAATCAGAAACCACAATCTATTGATGACAAGTTATGGCAAGAATACTCTACTAATCCATGGAATCTCAATAACTTGCCTAAGTTAAAAGGCTCGATGCTTCGAGCTGTTCATCACAATATCACTGGTGTTATGGTACCTTGGCTGTATATAGGAATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTATTCAATGAATTATCTACACTGGGGAGAGCCAAAGTGCTGGTACAGTGTTCCTGGAAGTCAAGCCAGGGCATTCGAGAAGGTGATGAGAAGAAGCCTTCCTGACCTTTTCGATGCACAACCTGATCTGCTTTTTCAGCTTGTTACCATGTTAAACCCATCTGTCTTGCAAGAGAATGGAGTTCCTGTCTACAGCATACTTCAGGAGCCTGGAAATTTTGTTATTACTTTCCCCAGATCTTACCATGGTGGTTTCAATCTTGGTCTGAATTGTGCAGAGGCAGTCAATTTTGCTCCAGCTGACTGGCTACCATACGGTGCATTTGGAGCTGATCTCTATAAGCGGTATCACAAAACAGCTGTCTTGTCTCATGAGGAGCTTCTTTGTGTAGTAGCCCAGTATGGTGATGTTGACAGCAGAGGGTCATCTTATTTGAAAATTGAATTGCTGAAGATACTGGATAGAGAAAAATCCTGGAGGGAGAAACTTTGGAAAAATGGTATCGTTAAATCTTCTCGTTTAGCTCCTCGGAAGTGTCCCCAATATGTAGGAACTGAAGAGGATCCAGCATGCATTATTTGCCAGCAATATCTCTATCTCTCTGCAGTTGTATGCAGTTGCAGACCATCATCTTTTGTGTGTCTGGAGCACTGGGAACACCTTTGTGAGTGCAAAACTGCTAAACTCCGTCTTCTTTATCGTCATTCACTTGGTGAATTGAATGACTTGGCATTTTCAATTGACAAATATATTTCTGAAGAAAAAGCCGAGAGTTGGGAACACCTTTGTGAGTGCAAAACTGCTAAACTCCGTCTTCTTTATCGTCATTCACTTGGTGAATTGAATGACTTGGCATTTTCAATTGACAAATATATTTCTGAAGAAAAAGCCGAGAGTAGAAGTGCAAAAAAGCAGTCTTCATGTCTGAGTGCTTTGACAAAAAAGGTGAAAGGTAGCTCCATTACATTCACTCAACTTGCTACAGAATGGCTTCTGCAATCTAGTACTATTCTTCAGAATGTTTTTGTGACTGATGCATCTGTTATCGCACTAAGGAAAGCTGAACAGTTTCTGTGGGCTGGTTCCGAGATGGATTCTGTTCGGGATATGGTAAAGAGTTTGACTGAAGCTCAGCAATGGGCAGAAGGGATAAAAGATTGTGTCACAAAAATTGAGTTGAGGTTGAAGCATCAGGACTCAAGTTTAAAGAAAATTCATATAGAATATGTTAATGAGTTACTGAGATTTAACCCTGTACCATGCAACGAGCCTCATTATCATAAATTGAAGGAATATGCAAAAGAAGCAAGCTTGTTAATTCAAGAGATCGAGACTGCTTTGTCAATGCGTTCCAACTTGTCTGAGTTGGAACTTCTATACTCTAGAGCTTGTGGAATACCCATCTATGTGAAAGGGACTAAAAAATTAAGAAGGAAGATTTCTTCAACCAAGGCATGGATGTGTAGTGTCAGAAGCTGCATCTCAGCTAGAGATCCTGCTGAATTAGATGTCGATGTTCTTTACAAGTTAAAATCAGAGATTGCGGATCTTCAAGTTCAACTCCCAGAGATAGATGCACTTCAGAATCTATTAAATCAGGCAGAATCTTGTAGTTCTCAATGTTGTTGCATGTTAGAAGGTCCTATGAATCTCAAGAATGTTGGTTTGCTGCTTAAGGAATGGGACAGTTTTACAGTTGATGTACCGGAGCTGAGGCTACTAAGGAATTACCATTCAGATGCTATGTCATGGGTTTCTCACTTTAATGATGTTTTAGGGAGAGCTCACAGACCGGGAGATCATCATAATGCTGTTGATGAATTGAAAAGCATTCTTGAAAAAGGCTTCTCTTTGAAAATTCAAGTTGATGAGTTGCCTCTAGTTGAGATTGAGCTGAAGAAGGCTAATTGCCGACAGAAAGCTTCCAAGGCACATGATTCTAAGATGCCCCTCGAATTCATTCAGCTACTGCTGAAGGAGGCTACTATGCTTGGAATTGAGGGAGAGAAGCAATTCGTTAGTTTATCGTGTGTGCTTGATGTCGCCATGCGTTGGGAGGAAAGAGCCGGAGAGATTCTTTCATCTAAGGCTTCTATTTCTGATTTTGAGGACATGCTAAGAGCTTCAGAAAATATATTTGTTAATCTTGCCTTACTTAATGATGTCAAAGAAGCGTTAACGGAAGCTAATTCCTGGTTAAGGAATTCAAAGCCATATTTAGTATCATCTAATTGTATGTCAAACTCTTGGCGAAACGTTGGGGACTTGCAGTTGTTGGTTTCTCAATCAAAGCATCTTAAAGTACATTTAGAAGAAAGAGGGACGCTTGAAATAATTTTGAATAACTGCAAAAAATGGGAGTGTGAAGCACATTCTCTACTTGATGATGCTCAGTGTTTATTTGAATTGGATAACACTGTTCATGGAATGAGCAGTGGTTTATTGTTTAAAGTAGAAGATTTGATTGCACGAATTCAGTCTGCCATAGCATCTGGTGTATCTCTTGGTTTTGACTTCAGTGATATTTCAAAGCTTCAAGCATCTTGTTCTACCCTGCAGTGGTGCAAAAGAGCCCTATGTTTCTGCAATCATTCTCCTTCTTTAAAGGATGTTTTGGAAGTTGTGGAAGGCCTCTCTCATTCAGCTGTTTCTGGTGCTCTTTTGAAAGTTCTGGTTGATGGGGTTGAATGGCTTAGGAGAGCATTACAGGGGATATCTAGACCTTGCAATTCTAGAAGATGTAAATTAACTGATATTCAAGATATTCTTACCGATTATCAGATTATTAAAATGACCTTTACGGATGTAAATTGTCAACTTGAAGAAGCCATTGGAAAGCATAGGTCGTGGCAAGAGCAAGTGCATCAATTTTTTAGTCTAAGTTCTAGGGAACGAACTTGGTCATCAATATTGCACCTCAAGGAACTTGGAGATTCCGTTGCCTTTAGTTGCTCAGAACTTGATTCAATATTATCAGAAGTTGAGAAGGTGGAAAATTGGAAGAAAAGATGCATCGATTATATTGGAGCTTTATTCCAAAATGAAAAATCGCTGCTTCATGCACTGCAGAAGATAAAACAGACTCTAGATAGATCGCTCTACATATATGGCAAGTTCCAAAAACAGAAGGAACCAAACCTATGCAACTGCTGCTTTGTTGATTCTCAAGATCAAGACTTTCTTACTTGTTCCACTTGTATGGACCGCTATCACTTGCGGTGCATTGGACTAGCAGAAAAAGACACTGGCATCGGCGACTACAAATGCTCTTACTGTGAAATTTTGAAGGGTAAATCCCAATATTCAAATGGAAGTTCCCTCCTGAGGTTTGAGAAACATATTGAATTGAACATTCTTGTCGAACTTCTGTCTGATGCTGAACGTTTCTGTCTGTGGATTGACGAAAAAGATCTTCTGAACCAACTTATTGAGAAAGCCTTTGCATGCAAATCTGGCTTGAGAGAAATAGTGAACCATTCATCAGCTTATGTCGACAAAGATATTACCATCATCTCTGAAAAATTGATCATTGCATTAAAGGCTAGCAAAGTGGCTGGTGTCTATGATCAAGGTGATAGTTGTGACCTTGAGCTGGCTTTAGCAAAACACTTGTGGAAGATTCAAGTCAATACAGTGTTAAGTGGTGCAGTTAAGCCCACTATTGAAGAGATTCAGAAACATCTAAAAGAGGGAATGTCCATGGAAATATCAGCCAAAGATCACTATATGCTGAAACTTACAAATGTGAAGTGCCTGGGCTTGCACTGGGTGGAACTAGCCAAAAAGATATCAAATGATTCTGGAGCACTCGGCCTAGATAAAGTATATGAGCTTGTATTGGAAGGTGAAAACTTGCCAGTTGATGTAACGGAGGAACTTAAGATGTTAAGAGCTCGATGCATGCTTTATTGCATTTGTCGAAAGCCCTTTGATCCAGGAAGGATGATTGCATGTTATCAGTGTAGTGAGTGGTATCACTTTGATTGTATGAAATTATCATGCACGCAAGATATCTACATTTGCCCTGCGTGCAACCCGTGTACAGGATTGCCTACTAACCATGACAGATTAACTAGTGGGAAACTTGAGGAGCCTAAAACCCCTTCTCCCAGGCATAATAACCCTAGAAAGAAACGGAAGCGAGATGTGCCCAGTCACAGTTGGAATGAAAATGATACTAATTTTAGGTTAGATGGGACAGAATGTCTAAGGTGGAAAATTCGCAAATCATTTAGAAGAGTAACTAAAAGACGTGTTGAACTTCAAAGTCTTTCTCCATTTATATGCATAAAATGA 5604 0.4008 MGKGKPRAVEKGVVGPNLSVSSTTIPSAPVFYPTEDEFKDPLEFIYKIRPQAEPFGICRIVPPKNWKPPFALDLDSFTFPTKTQAIHKLQVRPAASDSKTFQLEYSRFLKDHSSKKLKKKIVFEGEDLDLCKLFNAVKRFGGYDKVVDGKKWGEVARFVNSSVKISDCAKHVLCQLYREHLYDYQVFCNRINKGTAVSCCKKSVEEDCKSGHRVQVQGSVSEKHHGVVDGLKVKDRRVKEENRDQICEQCKSGLHGDVMLLCDRCDKGWHIYCLSPPLKQIPLGNWYCFNCLSSDRDSFGFVPGKQYSLETFKRIADRSRRRWFGQGPVSRVQIEKKFWEIVEGSVGEVEVMYGNDLDTSLYGSGFPNETNQKPQSIDDKLWQEYSTNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSQARAFEKVMRRSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSILQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYKRYHKTAVLSHEELLCVVAQYGDVDSRGSSYLKIELLKILDREKSWREKLWKNGIVKSSRLAPRKCPQYVGTEEDPACIICQQYLYLSAVVCSCRPSSFVCLEHWEHLCECKTAKLRLLYRHSLGELNDLAFSIDKYISEEKAESWEHLCECKTAKLRLLYRHSLGELNDLAFSIDKYISEEKAESRSAKKQSSCLSALTKKVKGSSITFTQLATEWLLQSSTILQNVFVTDASVIALRKAEQFLWAGSEMDSVRDMVKSLTEAQQWAEGIKDCVTKIELRLKHQDSSLKKIHIEYVNELLRFNPVPCNEPHYHKLKEYAKEASLLIQEIETALSMRSNLSELELLYSRACGIPIYVKGTKKLRRKISSTKAWMCSVRSCISARDPAELDVDVLYKLKSEIADLQVQLPEIDALQNLLNQAESCSSQCCCMLEGPMNLKNVGLLLKEWDSFTVDVPELRLLRNYHSDAMSWVSHFNDVLGRAHRPGDHHNAVDELKSILEKGFSLKIQVDELPLVEIELKKANCRQKASKAHDSKMPLEFIQLLLKEATMLGIEGEKQFVSLSCVLDVAMRWEERAGEILSSKASISDFEDMLRASENIFVNLALLNDVKEALTEANSWLRNSKPYLVSSNCMSNSWRNVGDLQLLVSQSKHLKVHLEERGTLEIILNNCKKWECEAHSLLDDAQCLFELDNTVHGMSSGLLFKVEDLIARIQSAIASGVSLGFDFSDISKLQASCSTLQWCKRALCFCNHSPSLKDVLEVVEGLSHSAVSGALLKVLVDGVEWLRRALQGISRPCNSRRCKLTDIQDILTDYQIIKMTFTDVNCQLEEAIGKHRSWQEQVHQFFSLSSRERTWSSILHLKELGDSVAFSCSELDSILSEVEKVENWKKRCIDYIGALFQNEKSLLHALQKIKQTLDRSLYIYGKFQKQKEPNLCNCCFVDSQDQDFLTCSTCMDRYHLRCIGLAEKDTGIGDYKCSYCEILKGKSQYSNGSSLLRFEKHIELNILVELLSDAERFCLWIDEKDLLNQLIEKAFACKSGLREIVNHSSAYVDKDITIISEKLIIALKASKVAGVYDQGDSCDLELALAKHLWKIQVNTVLSGAVKPTIEEIQKHLKEGMSMEISAKDHYMLKLTNVKCLGLHWVELAKKISNDSGALGLDKVYELVLEGENLPVDVTEELKMLRARCMLYCICRKPFDPGRMIACYQCSEWYHFDCMKLSCTQDIYICPACNPCTGLPTNHDRLTSGKLEEPKTPSPRHNNPRKKRKRDVPSHSWNENDTNFRLDGTECLRWKIRKSFRRVTKRRVELQSLSPFICIK* 1868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4159 1867 ProSiteProfiles JmjC domain profile. 384 550 IPR003347 -
Psa2g4159 1867 ProSiteProfiles ARID domain profile. 95 189 IPR001606 GO:0003677
Psa2g4159 1867 MobiDBLite consensus disorder prediction 1794 1822 - -
Psa2g4159 1867 SUPERFAMILY FYVE/PHD zinc finger 1734 1786 IPR011011 -
Psa2g4159 1867 CDD PHD_RSF1 247 291 - -
Psa2g4159 1867 ProSitePatterns Zinc finger PHD-type signature. 1484 1528 IPR019786 -
Psa2g4159 1867 SMART JmjN_1 27 68 IPR003349 -
Psa2g4159 1867 Pfam PHD-finger 246 293 IPR019787 -
Psa2g4159 1867 CDD ARID 97 184 - -
Psa2g4159 1867 SUPERFAMILY FYVE/PHD zinc finger 1480 1530 IPR011011 -
Psa2g4159 1867 Pfam ARID/BRIGHT DNA binding domain 99 184 IPR001606 GO:0003677
Psa2g4159 1867 Gene3D Cupin 230 556 - -
Psa2g4159 1867 SMART cupin_9 384 550 IPR003347 -
Psa2g4159 1867 ProSitePatterns Zinc finger PHD-type signature. 247 291 IPR019786 -
Psa2g4159 1867 SMART bright_3 96 190 IPR001606 GO:0003677
Psa2g4159 1867 SMART PHD_3 1739 1781 IPR001965 -
Psa2g4159 1867 SMART PHD_3 246 292 IPR001965 -
Psa2g4159 1867 SMART PHD_3 1483 1529 IPR001965 -
Psa2g4159 1867 PANTHER LYSINE-SPECIFIC DEMETHYLASE 26 683 - -
Psa2g4159 1867 PANTHER LYSINE-SPECIFIC DEMETHYLASE 693 831 - -
Psa2g4159 1867 Pfam C5HC2 zinc finger 627 679 IPR004198 -
Psa2g4159 1867 ProSiteProfiles Zinc finger PHD-type profile. 244 294 IPR019787 -
Psa2g4159 1867 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 693 831 - -
Psa2g4159 1867 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 26 683 - -
Psa2g4159 1867 Gene3D Cupin 1734 1861 - -
Psa2g4159 1867 ProSitePatterns Zinc finger PHD-type signature. 1740 1780 IPR019786 -
Psa2g4159 1867 Pfam jmjN domain 29 62 IPR003349 -
Psa2g4159 1867 Gene3D Cupin 12 124 - -
Psa2g4159 1867 SUPERFAMILY Clavaminate synthase-like 340 565 - -
Psa2g4159 1867 SUPERFAMILY FYVE/PHD zinc finger 241 294 IPR011011 -
Psa2g4159 1867 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Psa2g4159 1867 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1470 1535 IPR013083 -
Psa2g4159 1867 Pfam PLU-1-like protein 1187 1439 IPR013637 -
Psa2g4159 1867 Pfam PLU-1-like protein 933 1027 IPR013637 -
Psa2g4159 1867 Pfam PLU-1-like protein 986 1229 IPR013637 -
Psa2g4159 1867 Pfam JmjC domain, hydroxylase 417 533 IPR003347 -
Psa2g4159 1867 SUPERFAMILY ARID-like 78 194 IPR036431 GO:0003677
Psa2g4159 1867 SMART ARID_2 92 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4159 Psa-Chr2 421486426 421508536 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4159 28 92 JUMONJI Transcription Factor Family AT1G08620 55.072 2.78e-09 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Psa2g4159 PLU-1 3.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4159 K11446 - gmx:100789512 2910.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g4159 2 421486426 421508536 Psa2g4159 2 421486426 421508536 ECH