Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4141 ATGAATATTTTTGAATCATCGATTAGCGAGTTGAACTACAGCAGCACACACCACCATTCAGATACATCTTCTTCCTCAGAAACAAACTCCTCAAACAGTAATGATGCAGAAACGTTTTTGGCATCTGATAAACCAAAGAGGCGAACAGGTAGAAGAGTATTCAAGGAGACAAGGCACCCTGTGTATCGAGGAGTACGAAAGAGGAACAATAACAAGTGGGTTTGTGAAATGCGAGTTCCTAATAACAGTAACAAATGCAGCAAATCAAGGATTTGGCTTGGAACCTATCCTACGCCTGAAATGGCTGCACGTGCACACGATGTTGCTGCACTCGTTCTTAAGGGGAAATCAGCTTGTCTTAATTTTGCTGATTCCGCATGGCGGTTGAGGTTGCCGGAGTCGAATGATGCAGAGGAGATAAGGAAAGCAGCGATGGAAGCTGCTGAGTTGTTTGCTGTTGAGGACAACAACCAGTGTGAGTGTGAGGTTAGTGTTGGTGATGGAGTGGTCATGCAACATTCCAATGATAATCATGTTAGGACAGAATTCGACGACATGCATGATTTGATTTTGAGTATTGCAAATGAGCCTTTACGTTCTCCTTCTCCTTCCATCACAGATAACTGGGGTGAGATCGAGATGTTTGACACCCAAGTTTCATCATTATGGAATTTCGATACGCAGTATTAA 690 0.4304 MNIFESSISELNYSSTHHHSDTSSSSETNSSNSNDAETFLASDKPKRRTGRRVFKETRHPVYRGVRKRNNNKWVCEMRVPNNSNKCSKSRIWLGTYPTPEMAARAHDVAALVLKGKSACLNFADSAWRLRLPESNDAEEIRKAAMEAAELFAVEDNNQCECEVSVGDGVVMQHSNDNHVRTEFDDMHDLILSIANEPLRSPSPSITDNWGEIEMFDTQVSSLWNFDTQY* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4141 229 SMART rav1_2 61 129 IPR001471 GO:0003700|GO:0006355
Psa2g4141 229 MobiDBLite consensus disorder prediction 12 49 - -
Psa2g4141 229 CDD AP2 62 125 IPR001471 GO:0003700|GO:0006355
Psa2g4141 229 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Psa2g4141 229 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Psa2g4141 229 MobiDBLite consensus disorder prediction 12 39 - -
Psa2g4141 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1 226 - -
Psa2g4141 229 Gene3D AP2/ERF domain 61 124 IPR036955 GO:0003700|GO:0006355
Psa2g4141 229 ProSiteProfiles AP2/ERF domain profile. 61 123 IPR001471 GO:0003700|GO:0006355
Psa2g4141 229 SUPERFAMILY DNA-binding domain 61 125 IPR016177 GO:0003677
Psa2g4141 229 Pfam AP2 domain 60 115 IPR001471 GO:0003700|GO:0006355
Psa2g4141 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 226 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4141 Psa-Chr2 420682832 420683714 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4141 1 158 AP2-EREBP Transcription Factor Family AT5G51990 56.962 1.72e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa2g4141 AP2 9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4141 - - mtr:MTR_5g010940 282.337