Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4140 ATGTTGATTACTCATTGTAACGAAATAAGAGTAAAGCACGTTTTAAACCTTGTTTTCCACTGTTTTAAGCCTGGATGGATAGTAGTAGAAAACAGCCAAGTCAAGGTGTCAAACAATATGAAAAGAAAGAATGATATGGAACCTTTCAAATCTAACCTTTGTCGTTATCATCATATTCTGTCCCATGAAAATGAAGAAAATGACCCTGCCCGTGTTCGTGTGACATACGTGGTCCTTTCCTTTGCCACATCAGCAATAAGCTATATACAAATAAACTCTCCGCACACACTTCCTTCCTCACTTAACTCACTTTATTCAATCAACGTAAGCAACTTCATTTTTCTGATGAATATTTTTGAATCATCGATTAGCGAGTTGAACTACAGCAGCACACACCACCATTCAGATACATCTTCTTCCTCAGAAACAAACTCCTCAAACCGTAATGATGCGGAAACGCTTTTGGCATCTGATAAACCAAAGAGGCGAACAGGTAGAAGAGTATTCAAGGAGACAAGGCACCCTGTGTATCGAGGAGTACGAAAGAGGAACAATAACAAGTGGGTTAGTGAAATGCGAGTTCCTAATAACAGTAACAAATGCAGCAAATCAAGGATTTGGCTTGGAACCTATCCAAAGCCTGAAATGGCTGCACGTGCACATGATGTTGCTGCACTCGTTCTTAAGGGGAAATCAGCTTGTCTTAATTTTGCTGATTCCGCATGGCGGTTGAGGTTGCCGGAGTCGAATGATGCAGAGGAGATAAGGAAAGCGGCGATGGAAGCTGCTGAGTTGTTTTCTGTTGAAGACAACAACCAGTGTGACTGTGAGGTTAGTGTTGGTGATGGAGTGGTCATGCAACATTCCAATGATATGCATGTTACGATCGAACAAGTTCCGACGGAATCCGACGACATGCATGATTTGATTTTGAGTATTGCAAATGAGCCTTTACGTTCTCCTTCTCCTTCCATCACAGATAACTGGGGTGAGATCGAGAAGTTTGATACTCAAGTTTCATCATTATGGAATTTCGATACGCAGTATTAA 1050 0.4114 MLITHCNEIRVKHVLNLVFHCFKPGWIVVENSQVKVSNNMKRKNDMEPFKSNLCRYHHILSHENEENDPARVRVTYVVLSFATSAISYIQINSPHTLPSSLNSLYSINVSNFIFLMNIFESSISELNYSSTHHHSDTSSSSETNSSNRNDAETLLASDKPKRRTGRRVFKETRHPVYRGVRKRNNNKWVSEMRVPNNSNKCSKSRIWLGTYPKPEMAARAHDVAALVLKGKSACLNFADSAWRLRLPESNDAEEIRKAAMEAAELFSVEDNNQCDCEVSVGDGVVMQHSNDMHVTIEQVPTESDDMHDLILSIANEPLRSPSPSITDNWGEIEKFDTQVSSLWNFDTQY* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4140 349 MobiDBLite consensus disorder prediction 154 171 - -
Psa2g4140 349 PRINTS Ethylene responsive element binding protein signature 177 188 IPR001471 GO:0003700|GO:0006355
Psa2g4140 349 PRINTS Ethylene responsive element binding protein signature 204 220 IPR001471 GO:0003700|GO:0006355
Psa2g4140 349 SMART rav1_2 176 244 IPR001471 GO:0003700|GO:0006355
Psa2g4140 349 Gene3D AP2/ERF domain 176 239 IPR036955 GO:0003700|GO:0006355
Psa2g4140 349 SUPERFAMILY DNA-binding domain 176 240 IPR016177 GO:0003677
Psa2g4140 349 MobiDBLite consensus disorder prediction 134 171 - -
Psa2g4140 349 ProSiteProfiles AP2/ERF domain profile. 176 238 IPR001471 GO:0003700|GO:0006355
Psa2g4140 349 MobiDBLite consensus disorder prediction 134 153 - -
Psa2g4140 349 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 116 346 IPR045277 GO:0003700
Psa2g4140 349 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 116 346 - -
Psa2g4140 349 CDD AP2 177 240 IPR001471 GO:0003700|GO:0006355
Psa2g4140 349 Pfam AP2 domain 175 230 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4140 Psa-Chr2 420631320 420633294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4140 116 273 AP2-EREBP Transcription Factor Family AT5G51990 55.696 6.52e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa2g4140 AP2 4.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4140 - - mtr:MTR_5g010940 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g4140 2 420631320 420633294 Psa2g4140 2 420631320 420633294 ECH
Psa4g1576 4 109869525 109870472 Psa2g4140 2 420631320 420633294 PCT