Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4131 ATGATGCAAGAACCAAGCTTAGGGATGATGCAAGGTGGTGGTGGTGGTTACGGTGGAGACGGCGGCAGCGGTGGTGAAAACCGACAACTCAAGGCGGAGATAGCAACACATCCTCTATACGAACAGCTTCTGTCTGCACATGTGGCTTGTCTTCGAGTTGCAACTCCTATAGATCAGTTACCATTGATTGATGCACAGTTATCTCAATCTCATCATCTTCTACGATCTTATATCTCTCAACAAACTCATTCTCTTTCACCTCATGATCGTCAACAACTCGACAACTTCCTCGCACAATATTTGATAGTTTTGTGTACTTTCAAAGAACAGCTTCAACAACATGTTCGAGTTCATGCTGTTGAGGCTGTTATGGCTTGCCGTGATATCGAAAATACCTTACAAGCTCTCACTGGAGTGAGTTTGGGAGAAGGAAGCGGCGCAACAATGTCTGACGATGAAGATGAACAATTGCAATTGGATTATTGTTTAGATAATCAATCTAGTGGTGGTGGTGATCATGACATGATGGGACTTGGTCCATTACTTCCTACTGAATCCGAAAGGTCACTCATGGAAAGAGTTCGTCAAGAACTCAAAATTGAACTCAAACAGGGTTTTAAGTCTCGAATTGAAGATGTAAGAGAGGAAATATTAAGGAAAAGAAGAGCTGGAAAATTACCAGGTGACACAACTTCTGTCTTGAAGAATTGGTGGCAACAACATGCAAAGTGGCCTTATCCAACTGAAGATGATAAAGCAAAACTTGTGGAGGAAACAGGATTGCAACTGAAGCAAATAAACAATTGGTTTATAAACCAAAGGAAACGAAATTGGCATAGCAATTCTCAATCTGTTACCTCTTTGAAATCCAAACGCAAGAGGTAG 885 0.4147 MMQEPSLGMMQGGGGGYGGDGGSGGENRQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPLIDAQLSQSHHLLRSYISQQTHSLSPHDRQQLDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEDEQLQLDYCLDNQSSGGGDHDMMGLGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4131 294 SUPERFAMILY Homeodomain-like 219 284 IPR009057 -
Psa2g4131 294 Pfam Homeobox KN domain 237 276 IPR008422 GO:0003677|GO:0006355
Psa2g4131 294 CDD homeodomain 220 281 IPR001356 GO:0003677
Psa2g4131 294 Pfam KNOX2 domain 86 137 IPR005541 GO:0003677|GO:0005634
Psa2g4131 294 ProSiteProfiles 'Homeobox' domain profile. 217 280 IPR001356 GO:0003677
Psa2g4131 294 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 3 294 - -
Psa2g4131 294 SMART KNOX2_2 83 138 IPR005541 GO:0003677|GO:0005634
Psa2g4131 294 Gene3D - 216 290 - -
Psa2g4131 294 Pfam KNOX1 domain 30 71 IPR005540 GO:0003677|GO:0005634
Psa2g4131 294 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 294 - -
Psa2g4131 294 SMART HOX_1 219 284 IPR001356 GO:0003677
Psa2g4131 294 ProSiteProfiles ELK domain profile. 197 217 IPR005539 GO:0003677
Psa2g4131 294 SMART KNOX1_2 28 72 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4131 Psa-Chr2 420270375 420274322 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4131 2 293 Homeobox Transcription Factor Family AT1G62990 78.498 4.68e-169 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Psa2g4131 KNOX2 2.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4131 - - zju:107405822 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g4131 2 420270375 420274322 Psa2g4131 2 420270375 420274322 ECH