Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4116 ATGAGAATACAGTGTCATATTCATCTTTGTAATGTTCTATTGTGCTTCATTCTATGTTTGTTTTGGTCTATTCTCACGGTTTCAACAGAAACTGAGAAGGAGATTTTACTTCAGTTCAAGGGTAACATCACAGAAGATCCATACAATACCTTGAGTTCATGGGTTTCTAGTGGAGACCCTTGTCAAGGTTATAAAGGTGTTTTCTGTAACTTAGAAGGTTTTGTGGAAAGAATCGTGCTTTGGAACACTAGCTTGGGAGGGGTGTTGTCTCCAGCACTCTCAGGATTGAAGAGGTTGAGGATATTGACATTGTTTGGGAATCGATTTTCGGGTAATATCCCGGATGGATATGCTGATCTTCATTCATTGTGGAAGATCAATGTTAGCTCCAATGCGTTATCTGGTTTGATCCCGGATTTCATCGGCGATTTGCCTAACATTCGGTTTCTAGACTTATCGAAGAATGGCTTCAATGGGGAGATACCTTCGGCTTTGTTTAGGTACTGCTATAAAACCAAGTTTGTTTCTCTTTCTCATAACAATCTTGTTGGTTCAATTCCTTTATCCTTGGTGAATTGCTCCAACCTCGAAGGTTTTGATTTTTCTTTCAATAATCTTAGTGGTGTTGTCCCTTCTAGACTCTGTGATATTCCCGTGTTATCATATGTATCTCTGAGAAGCAATGCGTTATCGGGTAGTGTGGAAGATCGCCTTTCTTCATGCCATAGTTTAATGCATTTGGATTTAGGTAGTAATGGATTTACTGATTTGGCTCCATTCAGCATCCTTGGAATGCAGAATCTTACTTACTTCAATATATCCTATAATCGGTTTGAAGGACAAATTCCTGATATCGCTTCATGTAGTGAGAGATTAGAGATCTTTGATGCTTCGGGGAATAATTTGGATGGGGTGATTCCATCCAGCATAACTAGATGCAAGAAGCTAAAACTCTTGTCATTGGAGTTGAATAAGCTGAAAGGGAGTATCCCAGTTGATATTCCGGAATTGCGGGGACTATTGGTTATGAAATTGGGTAATAACTCGATAGATGGAACGATTCCCAAGGGGTTCGGCAACATTGAGCTGCTTGAATTGCTGGATTTGAGCAACTTAAACCTCGTTGGCGAAATTCCGGTTGATATAACAAATTGCAAGTTTCTTCTTGAGTTGGACGTTTCTGGTAATAACTTAGACGGCGAGATTCCACAGGCCATTTACAAAATGACGAATCTGGAAGCCCTTGACCTACATTATAACAAGCTTAAGGGAAGCATCCCATCGAGCCTAGGAAACATATCAAGGATTGAATATCTAGATCTATCGCATAATTCACTTTCTGGTTCAATCCCTACTTCCCTTGGAGATTTAAACAACTTGACACATTTTGATCTCTCGTTCAACAATCTCTCCGGTGTCATTCCTAATATTGCATCCATACAGAATTTTGGTGCACCTGCATTTTCCAATAATCCTTTTCTATGCGGCGCTCCGTTAGACACCCGTTGCTCAGCAAACGGAACTAGATCACCGTCTTCAGCTTCCGGGAAAACTAAACTTCTCAGTGTCTCTGCAATTATTGCTATTGTAGCTGCAGCTTTAATTCTTACCGGGGTTTGTTTGGTGACCATCATGAATATTAGGGCCCGTCGTAGAAAAAAAGACGATGACGAGGTTATGATTGTTGAGAGTACACCTCTAACATCATCGGAATCAAGTATTATTATTGGAAAGCTGGTTCTCTTCAGCAAAAGTTTACCATCAAAATACGAAGATTGGGAGGCAGGCACCAAAGCATTGCTTGACAAAGAGTCTTTGATAGGCGGCGGATCGATTGGTACGGTCTACAAAACCGATTTCGAAGGTGGCATCTCAATTGCAGTAAAGAAGCTCGAGACTTTAGGAAGAATCGGAAATCAAGAGGAGTTCGAACAAGAAATTGGACGACTAGGAAACCTTCAGCACCATAATTTAGTTGCTTTTCAAGGTTATTACTGGTCCTCTTCAATGCAGTTGATTTTGTCAGAATTTGTTTCAAACGGGAATCTATATGATAATCTACACGGTCTTGGCTATCCTGGAACCAGCACAAGTAGAGGCAATAGGGAGTTAGATTGGCCGAGAAGGTTCCAAATTGCACTTGGAACTGCAAGAGCTCTTGCTTATCTCCACCACGACTGTCGTCCTCCAATCCTTCACCTCAACCTTAAATCCTCAAACATACTCTTAGATGACAAGTATGAAGCCAAGTTATCTGATTATGGATTAGGTAAGTTGCTACCGATTTTGGATAACTACGTTTTGACCAAGTTCCACAATGCTGTTGGGTATGTTGCACCAGAGTTGGCTCAAAGCTTTAGGCAGAGTGAGAAGTGTGATGTTTACAGTTTTGGCGTCATTCTTTTGGAGCTCGTTTCAGGGAGGAAGCCGGTAGAAAGTCCAACCACAAATGAGGTTGTGGTTTTGTGTGAATACGTGAGAGGTTTGTTGGAGACTGGCTCGGTTTCAAATTGTTTTGACAGGAATTTACTGGGATTTGCTGAGAATGAATTGATTCAGGTTATGCGATTGGGGCTTATTTGTACTTCAGAGGATCCTTTAAGGAGACCAAGCATGGCTGAAGTTGTTCAGGTCCTTGAGTCCATCAGAAATGGATTGGAATCTCATTAA 2670 0.4105 MRIQCHIHLCNVLLCFILCLFWSILTVSTETEKEILLQFKGNITEDPYNTLSSWVSSGDPCQGYKGVFCNLEGFVERIVLWNTSLGGVLSPALSGLKRLRILTLFGNRFSGNIPDGYADLHSLWKINVSSNALSGLIPDFIGDLPNIRFLDLSKNGFNGEIPSALFRYCYKTKFVSLSHNNLVGSIPLSLVNCSNLEGFDFSFNNLSGVVPSRLCDIPVLSYVSLRSNALSGSVEDRLSSCHSLMHLDLGSNGFTDLAPFSILGMQNLTYFNISYNRFEGQIPDIASCSERLEIFDASGNNLDGVIPSSITRCKKLKLLSLELNKLKGSIPVDIPELRGLLVMKLGNNSIDGTIPKGFGNIELLELLDLSNLNLVGEIPVDITNCKFLLELDVSGNNLDGEIPQAIYKMTNLEALDLHYNKLKGSIPSSLGNISRIEYLDLSHNSLSGSIPTSLGDLNNLTHFDLSFNNLSGVIPNIASIQNFGAPAFSNNPFLCGAPLDTRCSANGTRSPSSASGKTKLLSVSAIIAIVAAALILTGVCLVTIMNIRARRRKKDDDEVMIVESTPLTSSESSIIIGKLVLFSKSLPSKYEDWEAGTKALLDKESLIGGGSIGTVYKTDFEGGISIAVKKLETLGRIGNQEEFEQEIGRLGNLQHHNLVAFQGYYWSSSMQLILSEFVSNGNLYDNLHGLGYPGTSTSRGNRELDWPRRFQIALGTARALAYLHHDCRPPILHLNLKSSNILLDDKYEAKLSDYGLGKLLPILDNYVLTKFHNAVGYVAPELAQSFRQSEKCDVYSFGVILLELVSGRKPVESPTTNEVVVLCEYVRGLLETGSVSNCFDRNLLGFAENELIQVMRLGLICTSEDPLRRPSMAEVVQVLESIRNGLESH* 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4116 889 SMART LRR_typ_2 457 479 IPR003591 -
Psa2g4116 889 SMART LRR_typ_2 409 433 IPR003591 -
Psa2g4116 889 SMART LRR_typ_2 144 168 IPR003591 -
Psa2g4116 889 SMART LRR_typ_2 120 143 IPR003591 -
Psa2g4116 889 SMART LRR_typ_2 337 360 IPR003591 -
Psa2g4116 889 SMART LRR_typ_2 241 264 IPR003591 -
Psa2g4116 889 Gene3D Phosphorylase Kinase; domain 1 570 677 - -
Psa2g4116 889 ProSiteProfiles Protein kinase domain profile. 601 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g4116 889 PANTHER UNNAMED PRODUCT 9 888 - -
Psa2g4116 889 Gene3D Ribonuclease Inhibitor 171 510 IPR032675 -
Psa2g4116 889 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Psa2g4116 889 Gene3D Ribonuclease Inhibitor 28 170 IPR032675 -
Psa2g4116 889 CDD STKc_IRAK 607 882 - -
Psa2g4116 889 Pfam Leucine rich repeat 243 302 IPR001611 GO:0005515
Psa2g4116 889 Pfam Leucine rich repeat 98 156 IPR001611 GO:0005515
Psa2g4116 889 Pfam Protein kinase domain 603 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g4116 889 PANTHER - 9 888 - -
Psa2g4116 889 Gene3D Transferase(Phosphotransferase) domain 1 678 888 - -
Psa2g4116 889 Pfam Leucine Rich Repeat 436 455 IPR001611 GO:0005515
Psa2g4116 889 Pfam Leucine Rich repeat 385 401 IPR001611 GO:0005515
Psa2g4116 889 SUPERFAMILY L domain-like 161 499 - -
Psa2g4116 889 ProSiteProfiles Leucine-rich repeat profile. 243 264 IPR001611 GO:0005515
Psa2g4116 889 SUPERFAMILY Protein kinase-like (PK-like) 602 880 IPR011009 -
Psa2g4116 889 SUPERFAMILY L domain-like 76 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4116 Psa-Chr2 419555629 419559719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4116 13 888 Receptor kinase-like Gene Family AT1G62950 64.462 0.0 1116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Psa2g4116 Pkinase 7.4e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4116 - - mtr:MTR_5g011410 1556.96