Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4106 ATGGATCAAATAACATCACATGGCCATTCACTTCCTCCACCTTTTCACACAGCAAGAGATCTTCATCTTCACCATCAACACCAACAACAACAGCAACAGCAACAGCAACACCATCAATTCCACGCTTTACAGCAACAACATACCACAGATCAAGATGAACAAAGCGGAAGTAGCAGCGGCGGAGGACTCAACCTCACAAACCGCGAAGAAAACAGCAACTTCAACGCCGATTTTAACGCCAAACTAGAATCCGGAGGAGGTTCCGGTGGCGATAATGATTCAATGACAAGAAGACCAAGAGGAAGACCGGCCGGATCCAAAAACAAACCAAAACCACCAATCATCATCACACGAGACAGCGCAAACGCCTTGAAAACTCACGTGATGGAAGTTGCAGACGGCTGCGACGTCGTTGAAAGTGTCAACAACTTCGCCAGACGCCGTCAGAGAGGCGTTTGCATCATGAGCGGAACCGGGACAGTTACGAACGTCACACTAAGGCAACCGGCTTCTCCTGGAGCTGTAGTAACTCTTCACGGACGGTTCGAGATTTTGTCGCTAGCCGGATCGTTTCTTCCGCCGCCGGCTCCGCCTGCCGCTTCTGGTTTGACTATATATCTGGCAGGAGGACAAGGACAGGTTGTTGGTGGAAGTGTTGTTGGTGCTTTGATTGCTTCTGGACCCGTTGTCATCATGTCTGCTTCTTTTAGTAACGCTGCTTATGAGAGACTTCCCTTGGAAGAAGATGATGGTTCTTCTTTGCAACAACTTCAAGGTGGTGGTGGTGGTGGTGGTTCTCCAAGTGGTGGTGGTGGTGGCGGTGGCGGTGTTCAACAGACACAGCTTTTAGGAGATTCAACTGCTCCACTTTTTCAAGCTATGCCTCAACCTCCAAATTCTAATCATAATCCCAATCTTCTCAATTCCGTTATGCCTTCTGATAATTTCTGGCCAACGGGTCGATCTCCGTATTGA 975 0.4882 MDQITSHGHSLPPPFHTARDLHLHHQHQQQQQQQQQHHQFHALQQQHTTDQDEQSGSSSGGGLNLTNREENSNFNADFNAKLESGGGSGGDNDSMTRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDVVESVNNFARRRQRGVCIMSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGALIASGPVVIMSASFSNAAYERLPLEEDDGSSLQQLQGGGGGGGSPSGGGGGGGGVQQTQLLGDSTAPLFQAMPQPPNSNHNPNLLNSVMPSDNFWPTGRSPY* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4106 324 MobiDBLite consensus disorder prediction 82 114 - -
Psa2g4106 324 ProSiteProfiles PPC domain profile profile. 121 258 IPR005175 -
Psa2g4106 324 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 6 324 - -
Psa2g4106 324 MobiDBLite consensus disorder prediction 22 60 - -
Psa2g4106 324 CDD DUF296 125 192 IPR005175 -
Psa2g4106 324 SUPERFAMILY AF0104/ALDC/Ptd012-like 121 250 - -
Psa2g4106 324 MobiDBLite consensus disorder prediction 249 324 - -
Psa2g4106 324 MobiDBLite consensus disorder prediction 273 324 - -
Psa2g4106 324 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 6 324 IPR014476 GO:0003680
Psa2g4106 324 Gene3D - 124 258 - -
Psa2g4106 324 Pfam Plants and Prokaryotes Conserved (PCC) domain 125 238 IPR005175 -
Psa2g4106 324 MobiDBLite consensus disorder prediction 27 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4106 Psa-Chr2 419359361 419362253 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4106 1 324 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 54.598 2.52e-82 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4106 - - gmx:100781436 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g4106 2 419359361 419362253 Psa2g4106 2 419359361 419362253 ECH