Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4089 ATGAATTTCTTCCATCTTCTCCTTTCTATGTTTCTGTTGATTTCATTTTTAACCTCACAAACTGTTTGTGGAAATGCTGAGCTCAGGGCTTTGATGGACTTGAAATCCTCTCTTGATCCAGAGGGAAAGATTCTTACTTCATGGATCAGTGATGGTAATCCATGTAGTGGTTCATTTGTAGGAGTTGCTTGCAATGATCATTGGAAGGTGGCCAATATTTCTTTGCAGGGAAAGGGACTTTCTGGTTCATTATCTCCGGTTGTTGCTGAACTTAAATGCTTGTCAGGGTTATACTTGCATTACAACAATCTTTCTGGTGAGATACCATCACAGATTTCAAATCTCACTGAGCTTGTTGATCTTTATCTTGATGTTAATAGTCTATCTGGAACTATTCCTCCTGAATTTGGCAATATGGCTAGTCTCCAAGTACTCCAGTTGGGAGATAATCAATTGGTGGGGAATATACCGACACAGATGGGTTCCTTGAAGCAGCTTACTACTCTTGCTTTGCAATATAACAAGTTAGATGGTCAAATTCCCCTTAGCTTGGGGAACCTGGAGAACTTAAGCAGGCTAAATTTGAGCTTCAACAACTTCAGTGGTACTATTCCTGCAACACTAGCCAATGTTGCAAAGTTGAAAGTTTTGGATATTCAAAACAATTCTCTATCAGGAATTGTCCCATCTGCATTGAAGAGACTTGGGGAAGGATTCCAAGGGGCAAACAACCAAGGTTTATGCGGAGTAGGACTTTCTACTTTGAGAGCTTGCAACGGGTATCCAGATTTAAACGTCAGCAACATTGATACCTCGGATCAAGACCACTTCAAAAATAATAATCTTGCAACGCCTCGCCCGGAGCCTGCAAATATCCCAGTGCATTGTAACCAGACACATTGCTCAAAATCAAGAAGGTTTCCTTTAAGTGTCATCACAACTGCAAGTGGTATAATCATCACTCTCGTATTCATAGGAGCTGGATTGTTTACATTTATCAAATACCGCCGTCGAAAGCAGAAGATTTCATCGAACTATTCTGAAGGGAAACTTAGTCCTCAGCAGCCTAAAGATTTATACAGAAAAAGCCCATCTACCCTTGTTAATCTTGACTATTATAATGGATGTTATCCATTGGCGGACGATCAAAAAGCTGGTGGATTAGCCAATGAATATCTAAACAAATTCAGGTTTAATGTAGAGGAAGTCGAGTCTGCAACACAATATCTTTCGGAAGCGAATTTATTGTGTAAGAGCAAATTCTCAGCAATGTATAAAGGAGTTCTCAGAGACGGTTCTCTCGTAGCTATTAGAAGCATTAACATGACATGTTGCAAAACCGAAGAAGCCGAATTTGCAAAGGGATTGAGTTTATTAACCTCACTTAGACATGAAAACGTTGTTAAGCTAAGAGGTTTCTGTTGCTCAAGTAGTAGAGGTGAATGTTACCTTATTTATGACTTTGCCACGATGGGCGACCTGTCTCAATACCTTGACATGGAAGATAGAAGCGGCCATTTGCTTGACTGGTCCAAGAGGGTTTCTATCATCAAGGGCATTGCAAAGGGTATTGGATATCTGCACAGCAATGAAGCAAGCAAACCTACAATAGTACACCAGAATATTTCAGTGGAGAATGTTCTCCTTGACAAAGAGTTTAATCCATTGATAATGGATGCTGGACTTCCTAAACTTCTTGCAGAAGATGTTGTTTTCTCAGCTCTAAAAGTAAGTGCTGCCATGGGATACTTAGCTCCTGAATACATTACTACCGGTCGCTTTACCGAGAAGAGTGACATATACGCATTTGGCGTTATTGTACTCCAAGTTTTATCTGGCAAGACAGCGATAGGCGGTTCGATACGGACAGCGTTTGAGTCTCTCAGATTTGATGATTGCATTGACACAAATCTTAATGGAAGATATTCTAGTTCTGAAGCAACGGCGCTTACAAAACTGGGAGTACTGTGTGTCCATGAGAGCCCCGACGAAAGACCGAGCATGGTGGATGTGATTCAGGAGCTAAGCATGTTTCAGGCTCATTCAAAATGA 2052 0.4079 MNFFHLLLSMFLLISFLTSQTVCGNAELRALMDLKSSLDPEGKILTSWISDGNPCSGSFVGVACNDHWKVANISLQGKGLSGSLSPVVAELKCLSGLYLHYNNLSGEIPSQISNLTELVDLYLDVNSLSGTIPPEFGNMASLQVLQLGDNQLVGNIPTQMGSLKQLTTLALQYNKLDGQIPLSLGNLENLSRLNLSFNNFSGTIPATLANVAKLKVLDIQNNSLSGIVPSALKRLGEGFQGANNQGLCGVGLSTLRACNGYPDLNVSNIDTSDQDHFKNNNLATPRPEPANIPVHCNQTHCSKSRRFPLSVITTASGIIITLVFIGAGLFTFIKYRRRKQKISSNYSEGKLSPQQPKDLYRKSPSTLVNLDYYNGCYPLADDQKAGGLANEYLNKFRFNVEEVESATQYLSEANLLCKSKFSAMYKGVLRDGSLVAIRSINMTCCKTEEAEFAKGLSLLTSLRHENVVKLRGFCCSSSRGECYLIYDFATMGDLSQYLDMEDRSGHLLDWSKRVSIIKGIAKGIGYLHSNEASKPTIVHQNISVENVLLDKEFNPLIMDAGLPKLLAEDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVLSGKTAIGGSIRTAFESLRFDDCIDTNLNGRYSSSEATALTKLGVLCVHESPDERPSMVDVIQELSMFQAHSK* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4089 683 Gene3D Phosphorylase Kinase; domain 1 381 488 - -
Psa2g4089 683 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 679 - -
Psa2g4089 683 SUPERFAMILY L domain-like 23 233 - -
Psa2g4089 683 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Psa2g4089 683 Gene3D Ribonuclease Inhibitor 175 246 IPR032675 -
Psa2g4089 683 SMART LRR_typ_2 91 115 IPR003591 -
Psa2g4089 683 SMART LRR_typ_2 139 163 IPR003591 -
Psa2g4089 683 SMART LRR_typ_2 211 234 IPR003591 -
Psa2g4089 683 SMART LRR_typ_2 187 210 IPR003591 -
Psa2g4089 683 Pfam Leucine rich repeat 189 235 IPR001611 GO:0005515
Psa2g4089 683 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 6 679 - -
Psa2g4089 683 Gene3D Ribonuclease Inhibitor 24 174 IPR032675 -
Psa2g4089 683 Pfam Protein tyrosine and serine/threonine kinase 415 675 IPR001245 GO:0004672|GO:0006468
Psa2g4089 683 SUPERFAMILY Protein kinase-like (PK-like) 391 679 IPR011009 -
Psa2g4089 683 Gene3D Transferase(Phosphotransferase) domain 1 490 682 - -
Psa2g4089 683 ProSiteProfiles Protein kinase domain profile. 410 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4089 Psa-Chr2 418739530 418743028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4089 6 523 Miscellaneous Gene Families AT4G22730 56.473 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Psa2g4089 PK_Tyr_Ser-Thr 3.2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4089 - - mtr:MTR_5g011840 1077.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g4089 2 418739530 418743028 Psa2g4089 2 418739530 418743028 ECH