Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4075 ATGAATGATCTAATGACAAAATCATTCACCAACTACGTTGATCTAAAAAAAGCAGCTATGAAAGATGAAGTTGATTTAGAAGCTGGTCTTCAAAAACAAGGTGTTAATGATGTTGAGTTAACAAGATCTTCAATAACTCATTTGGAAACCGACATGAATCTGTTCTTAGAAGAGGCTGAGAAAGTAAGAACAGAAATGGGTGAAATTCGTGATGTTCTAACAAATCTTCAACAAGCAAACGAAGAGAGCAAGTCCCTTCACAAAACTGATGCTTTGAAGTCATTGAGAGAAAGAATCAATACTGATATTGTAACTGTTTTGAAGAAAGCAAGGTGCATTAGAACTCAATTAGAAGAAATGGATCGTGCCAATGATGCTAATAGAAGACTCTCTGGACTTAAAGATGGTTCACCAGCCATTTATCGAACAAGAATCGCTGTCACCAATGGATTGCGTAAGAAGCTCAAGGAGCTTATGATGGAGTTTCAGGGGCTGAGGCAGAGAATGATGAGTGAATACAAAGAGACAGTAGGGAGAAGGTACTATACAGTGACAGGGGAACATGCAGACGAAGAGGTGATCGACAAGATAATATCAAATGGAGATGACGAAAGTTTTTTAGGAAAGGCAATACAAGAACATGGAAGAGGAAAGGTTCTTGAAACAGTGGTTGAGATACAGGACAGATACGATGCTGCAAAAGAGATTGAGAAGAGTTTGTTAGAACTTCATCAAGTTTTCTTGGATATGGCTGTTATGGTTGAAGCACAAGGTGAGAAAATGGATGATATTGAACATCATGTTCTTCATTCTTGTCATTATGTGAAAGATGGTACAAAGAATCTTCAGAGTGCTAAACAGTATCAGAAAAGTGGGAGGAAGTGGATGTGCATTGGGATTATACTTATGCTGATTCTGATTCTGGTCATTGTTATTCCCATTGTCACTAGTTTGAGCAGTTCTTGA 966 0.3789 MNDLMTKSFTNYVDLKKAAMKDEVDLEAGLQKQGVNDVELTRSSITHLETDMNLFLEEAEKVRTEMGEIRDVLTNLQQANEESKSLHKTDALKSLRERINTDIVTVLKKARCIRTQLEEMDRANDANRRLSGLKDGSPAIYRTRIAVTNGLRKKLKELMMEFQGLRQRMMSEYKETVGRRYYTVTGEHADEEVIDKIISNGDDESFLGKAIQEHGRGKVLETVVEIQDRYDAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHSCHYVKDGTKNLQSAKQYQKSGRKWMCIGIILMLILILVIVIPIVTSLSSS* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4075 321 PANTHER SYNTAXIN 5 314 IPR045242 -
Psa2g4075 321 Pfam Syntaxin 55 258 IPR006011 GO:0016020
Psa2g4075 321 Gene3D - 52 180 - -
Psa2g4075 321 SUPERFAMILY t-snare proteins 50 278 IPR010989 GO:0016020|GO:0016192
Psa2g4075 321 SMART SynN_4 47 174 IPR006011 GO:0016020
Psa2g4075 321 CDD SynN 55 199 IPR006011 GO:0016020
Psa2g4075 321 Coils Coil 148 168 - -
Psa2g4075 321 ProSitePatterns Syntaxin / epimorphin family signature. 229 269 IPR006012 GO:0005484|GO:0006886|GO:0016020
Psa2g4075 321 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 223 285 IPR000727 -
Psa2g4075 321 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 5 314 - -
Psa2g4075 321 Pfam SNARE domain 260 311 IPR000727 -
Psa2g4075 321 Gene3D - 219 318 - -
Psa2g4075 321 CDD SNARE_syntaxin1-like 222 283 - -
Psa2g4075 321 SMART tSNARE_6 218 285 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4075 Psa-Chr2 418471104 418472719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4075 1 321 SNARE and Associated Proteins AT1G08560 63.354 6.21e-133 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4075 K08486 - gmx:100816016 484.952