Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4054 ATGGAGAGTTACAAATGCAAACTTTGCACAAGATCATTCACCAGTGGCAGAGCACTGGGTGGCCACATGAAAGCTCATTTAGCCACCCTCTCTCACCACCACCGCACTCCTCCCTCTTCTTCTACCTTACTCTCATTTTCATCTTCTCGTGAAAATTCAGATGAAAAAAGTGTAATCAATCTTTCAGATCCCAAGTTTTCAGAGTACATTGTTCATGACAGAGAGAGTGAAACCGAGTCAAAGAACACCACTCAGAAACGATCCAACCGTAACCGAATCAGAAACTCAGAACAAAAGAAGCTTAAACAGAGCTTAATGGATTCACATTCACATTCACCGGTTAGTTCGATTTCCGAAACTTCTCCGGAAGAAGAACTTGCTAAAACTCTCATCATGCTATCAAGAGATAAATGGAAGATGGATGTTTTTGTCAAAGAAGAATCACAATCACAATCACAATCACAGTCACAAGAAGTTGAAAGATCAAAGGAAGAGATCGAGTTCATAAAGAATAGTAGGAAGCATAAATGTGACGAATGTGGACAGAGCTTTCGAAGTTCAACAGCAATGAAAAGTCACAGAAACATTTGTCTTCAAAATGAAGTTGCAACAACAACTGGTGATCATAAAATGTTCAAATGTTTGGTTTGTTCTAAGGTTTTTGGTTCTGGTCAAGCCTTAGGTGGTCACAAAAAATCTCACCTTCATCCATCTTCAAAGAAAAAACTCTGTTTCATCGATCTCAACTTGCCACCATCGCTACAAGAAATCGATGATAGCGACCAATGTGTTTTTTATGAGTAA 804 0.3905 MESYKCKLCTRSFTSGRALGGHMKAHLATLSHHHRTPPSSSTLLSFSSSRENSDEKSVINLSDPKFSEYIVHDRESETESKNTTQKRSNRNRIRNSEQKKLKQSLMDSHSHSPVSSISETSPEEELAKTLIMLSRDKWKMDVFVKEESQSQSQSQSQEVERSKEEIEFIKNSRKHKCDECGQSFRSSTAMKSHRNICLQNEVATTTGDHKMFKCLVCSKVFGSGQALGGHKKSHLHPSSKKKLCFIDLNLPPSLQEIDDSDQCVFYE* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4054 267 SMART c2h2final6 4 26 IPR013087 -
Psa2g4054 267 SMART c2h2final6 175 195 IPR013087 -
Psa2g4054 267 SMART c2h2final6 212 234 IPR013087 -
Psa2g4054 267 Gene3D Classic Zinc Finger 173 234 - -
Psa2g4054 267 ProSiteProfiles Zinc finger C2H2 type domain profile. 175 196 IPR013087 -
Psa2g4054 267 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 26 IPR013087 -
Psa2g4054 267 MobiDBLite consensus disorder prediction 70 124 - -
Psa2g4054 267 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Psa2g4054 267 ProSiteProfiles Zinc finger C2H2 type domain profile. 212 241 IPR013087 -
Psa2g4054 267 MobiDBLite consensus disorder prediction 107 123 - -
Psa2g4054 267 SUPERFAMILY beta-beta-alpha zinc fingers 200 242 IPR036236 -
Psa2g4054 267 Pfam C2H2-type zinc finger 212 235 - -
Psa2g4054 267 Pfam C2H2-type zinc finger 175 194 - -
Psa2g4054 267 Pfam C2H2-type zinc finger 4 28 - -
Psa2g4054 267 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 256 - -
Psa2g4054 267 ProSitePatterns Zinc finger C2H2 type domain signature. 214 236 IPR013087 -
Psa2g4054 267 MobiDBLite consensus disorder prediction 33 49 - -
Psa2g4054 267 Coils Coil 145 165 - -
Psa2g4054 267 MobiDBLite consensus disorder prediction 70 106 - -
Psa2g4054 267 SUPERFAMILY beta-beta-alpha zinc fingers 3 194 IPR036236 -
Psa2g4054 267 MobiDBLite consensus disorder prediction 30 49 - -
Psa2g4054 267 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 256 IPR044303 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4054 Psa-Chr2 417407170 417408355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4054 1 265 C2H2 Transcription Factor Family AT3G60580 35.644 2.80e-37 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa2g4054 zf-C2H2_6 9.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4054 - - gmx:100815124 195.667