Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa2g4054 | ATGGAGAGTTACAAATGCAAACTTTGCACAAGATCATTCACCAGTGGCAGAGCACTGGGTGGCCACATGAAAGCTCATTTAGCCACCCTCTCTCACCACCACCGCACTCCTCCCTCTTCTTCTACCTTACTCTCATTTTCATCTTCTCGTGAAAATTCAGATGAAAAAAGTGTAATCAATCTTTCAGATCCCAAGTTTTCAGAGTACATTGTTCATGACAGAGAGAGTGAAACCGAGTCAAAGAACACCACTCAGAAACGATCCAACCGTAACCGAATCAGAAACTCAGAACAAAAGAAGCTTAAACAGAGCTTAATGGATTCACATTCACATTCACCGGTTAGTTCGATTTCCGAAACTTCTCCGGAAGAAGAACTTGCTAAAACTCTCATCATGCTATCAAGAGATAAATGGAAGATGGATGTTTTTGTCAAAGAAGAATCACAATCACAATCACAATCACAGTCACAAGAAGTTGAAAGATCAAAGGAAGAGATCGAGTTCATAAAGAATAGTAGGAAGCATAAATGTGACGAATGTGGACAGAGCTTTCGAAGTTCAACAGCAATGAAAAGTCACAGAAACATTTGTCTTCAAAATGAAGTTGCAACAACAACTGGTGATCATAAAATGTTCAAATGTTTGGTTTGTTCTAAGGTTTTTGGTTCTGGTCAAGCCTTAGGTGGTCACAAAAAATCTCACCTTCATCCATCTTCAAAGAAAAAACTCTGTTTCATCGATCTCAACTTGCCACCATCGCTACAAGAAATCGATGATAGCGACCAATGTGTTTTTTATGAGTAA | 804 | 0.3905 | MESYKCKLCTRSFTSGRALGGHMKAHLATLSHHHRTPPSSSTLLSFSSSRENSDEKSVINLSDPKFSEYIVHDRESETESKNTTQKRSNRNRIRNSEQKKLKQSLMDSHSHSPVSSISETSPEEELAKTLIMLSRDKWKMDVFVKEESQSQSQSQSQEVERSKEEIEFIKNSRKHKCDECGQSFRSSTAMKSHRNICLQNEVATTTGDHKMFKCLVCSKVFGSGQALGGHKKSHLHPSSKKKLCFIDLNLPPSLQEIDDSDQCVFYE* | 268 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa2g4054 | 267 | SMART | c2h2final6 | 4 | 26 | IPR013087 | - | |
Psa2g4054 | 267 | SMART | c2h2final6 | 175 | 195 | IPR013087 | - | |
Psa2g4054 | 267 | SMART | c2h2final6 | 212 | 234 | IPR013087 | - | |
Psa2g4054 | 267 | Gene3D | Classic Zinc Finger | 173 | 234 | - | - | |
Psa2g4054 | 267 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 175 | 196 | IPR013087 | - | |
Psa2g4054 | 267 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 4 | 26 | IPR013087 | - | |
Psa2g4054 | 267 | MobiDBLite | consensus disorder prediction | 70 | 124 | - | - | |
Psa2g4054 | 267 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 26 | IPR013087 | - | |
Psa2g4054 | 267 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 212 | 241 | IPR013087 | - | |
Psa2g4054 | 267 | MobiDBLite | consensus disorder prediction | 107 | 123 | - | - | |
Psa2g4054 | 267 | SUPERFAMILY | beta-beta-alpha zinc fingers | 200 | 242 | IPR036236 | - | |
Psa2g4054 | 267 | Pfam | C2H2-type zinc finger | 212 | 235 | - | - | |
Psa2g4054 | 267 | Pfam | C2H2-type zinc finger | 175 | 194 | - | - | |
Psa2g4054 | 267 | Pfam | C2H2-type zinc finger | 4 | 28 | - | - | |
Psa2g4054 | 267 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 256 | - | - | |
Psa2g4054 | 267 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 214 | 236 | IPR013087 | - | |
Psa2g4054 | 267 | MobiDBLite | consensus disorder prediction | 33 | 49 | - | - | |
Psa2g4054 | 267 | Coils | Coil | 145 | 165 | - | - | |
Psa2g4054 | 267 | MobiDBLite | consensus disorder prediction | 70 | 106 | - | - | |
Psa2g4054 | 267 | SUPERFAMILY | beta-beta-alpha zinc fingers | 3 | 194 | IPR036236 | - | |
Psa2g4054 | 267 | MobiDBLite | consensus disorder prediction | 30 | 49 | - | - | |
Psa2g4054 | 267 | PANTHER | ZINC FINGER PROTEIN ZAT1-RELATED | 1 | 256 | IPR044303 | GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa2g4054 | Psa-Chr2 | 417407170 | 417408355 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa2g4054 | 1 | 265 | C2H2 Transcription Factor Family | AT3G60580 | 35.644 | 2.80e-37 | 131 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Psa2g4054 | zf-C2H2_6 | 9.1e-11 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa2g4054 | - | - | gmx:100815124 | 195.667 |