Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4041 ATGACAGTTGAAAAGGAAGATTTGGGTTTGAGCCTAAGCTTAAACTTCCCTCAAAATCCACCCAAACCTCAATACCTTAATCTCATGTCTTCTTCAACTCATTCCTCTTCTCCTTCCACCTACAATCCTCACAACAAACCTTCTTGGATCAATGCTTTCACATCTTCAGATCGGGATTCAGAACCATGCAGAGGCGGCGAAGAACGACCGTTACTCCTCCGAGGAATCGACGTGAACCGGTTACCTTCCGACGCTAACTGCGAAGAAGAAGCAGGCGTCTCATCTCCCAACAGCACGGTTTCAAGTGTGAGCGGTAAACGAAGCGAAAGAGAAATCACCGGCGAAGATCTTGACATGGAGAGAGATTGTTCAAGAGGAATCAGCGATGAAGAAGACGCTGAAACTTCCAGAAAAAAACTCAGACTCACCAAAGACCAATCTATTATCCTTGAAGAAAGTTTCAAAGAACACAACACTCTTAACCCCAAACAAAAATTGGCACTTGCAAAACAATTAGGCCTTCGTGCAAGACAAGTTGAAGTGTGGTTTCAAAATCGTAGAGCAAGGACTAAGCTGAAACAAACGGAGGTAGATTGTGAGTTTTTGAAGAGATGTTGTGAGAATCTAACGGATGAAAATCGGCGGTTGCAAAAAGAAGTTCAAGAGCTTAGAGCACTGAAACTTTCCCCACAATTCTACATGCAAATGACACCGCCTACAACGCTTACCATGTGCCCTTCTTGTGAGCGTGTCGCTGTTCCAACATCTGCCGTCGATGCTGCCACGCGTCGTCATCCTATGGTTCAAAATCATAGTCGTACATTTCCCGTGTATCCAACGGTTCAGCATAGGCCATTTGATACGCTTCGTCCTAATAGATCTTAA 885 0.4452 MTVEKEDLGLSLSLNFPQNPPKPQYLNLMSSSTHSSSPSTYNPHNKPSWINAFTSSDRDSEPCRGGEERPLLLRGIDVNRLPSDANCEEEAGVSSPNSTVSSVSGKRSEREITGEDLDMERDCSRGISDEEDAETSRKKLRLTKDQSIILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPTSAVDAATRRHPMVQNHSRTFPVYPTVQHRPFDTLRPNRS* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4041 294 SUPERFAMILY Homeodomain-like 128 194 IPR009057 -
Psa2g4041 294 MobiDBLite consensus disorder prediction 90 107 - -
Psa2g4041 294 ProSitePatterns 'Homeobox' domain signature. 168 191 IPR017970 GO:0000981|GO:0006355
Psa2g4041 294 MobiDBLite consensus disorder prediction 1 20 - -
Psa2g4041 294 Pfam Homeobox associated leucine zipper 193 227 IPR003106 GO:0006355|GO:0043565
Psa2g4041 294 MobiDBLite consensus disorder prediction 108 137 - -
Psa2g4041 294 CDD homeodomain 137 194 IPR001356 GO:0003677
Psa2g4041 294 PANTHER - 2 281 - -
Psa2g4041 294 PRINTS Lambda-repressor HTH signature 164 173 IPR000047 GO:0003677
Psa2g4041 294 PRINTS Lambda-repressor HTH signature 173 189 IPR000047 GO:0003677
Psa2g4041 294 SMART halz 193 236 IPR003106 GO:0006355|GO:0043565
Psa2g4041 294 MobiDBLite consensus disorder prediction 85 137 - -
Psa2g4041 294 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 281 - -
Psa2g4041 294 ProSiteProfiles 'Homeobox' domain profile. 133 193 IPR001356 GO:0003677
Psa2g4041 294 Pfam HD-ZIP protein N terminus 3 111 IPR006712 GO:0005634
Psa2g4041 294 Pfam Homeodomain 137 191 IPR001356 GO:0003677
Psa2g4041 294 Gene3D - 141 191 - -
Psa2g4041 294 Coils Coil 192 229 - -
Psa2g4041 294 SMART HOX_1 135 197 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4041 Psa-Chr2 416941590 416943690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4041 1 291 Homeobox Transcription Factor Family AT4G16780 62.333 2.67e-102 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa2g4041 HD-ZIP_N 1.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4041 K09338 - gmx:100813367 421.009