Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4036 ATGTACGGAGAGAATGTTTACGAAACCAATTCGTCCCTCTTAGATTCTATTAGGCTTCACTTGCTCGGAGATTCCGATGTTTTTACATTCGGAGCTTCGTCTGATGTTCCAGTTTTTTGTCGGAACTTCAGTTTCAACAAATTGTACCCATGTATGAGTGAGAATTGGGGGGAACTTCCCCTCAAAGAAGACGATTCAGAGGATATGCTACTTTACGGTGTACTTCGGGACGCTGTTAATGTTGGGTGGGTTCCGTCTCTCGACGGAGCTTCACCGGAGAGTTTTTCCTCGTGTGTTGTGTCGCCGGCGATAGTGAAGTCAGAGCCGGATGTTTTTCCGGTGGTGAAGAGTGTGTCTGAGAATGTTGTTCCTGCTCCAGTGAAGAGTAAGCATTACCGGGGAGTGAGGCGACGGCCGTGGGGGAAGTTTGCGGCGGAGATTCGTGACCCGGCTAAAAATGGGGCGCGGGTTTGGCTTGGAACATTTGAAACGGCTGAGGATGCGGCTTTGGCTTATGATCGGGCTGCGTATAGGATGCGTGGCTCGCGGGCTATGTTGAATTTTCCGCTTCGGGTTAATTCGGATGAGCCCGAGCCGGTTAGAGTGGCTTCGAAACGGTTTTCAGCGTCGGAGTTGTCCTCTTCGTCGTCGGTGAAACGGAGGAAGAAGGTGGTGGAGCCAATGGTGACAGGTCAAGCTGGATTGAAAATGGCGCAAGAGGGAAGCCAAGTGGCACATTGCACGTGGAGATAA 753 0.5113 MYGENVYETNSSLLDSIRLHLLGDSDVFTFGASSDVPVFCRNFSFNKLYPCMSENWGELPLKEDDSEDMLLYGVLRDAVNVGWVPSLDGASPESFSSCVVSPAIVKSEPDVFPVVKSVSENVVPAPVKSKHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRAMLNFPLRVNSDEPEPVRVASKRFSASELSSSSSVKRRKKVVEPMVTGQAGLKMAQEGSQVAHCTWR* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4036 250 SUPERFAMILY DNA-binding domain 131 191 IPR016177 GO:0003677
Psa2g4036 250 CDD AP2 130 189 IPR001471 GO:0003700|GO:0006355
Psa2g4036 250 PANTHER BNAANNG21280D PROTEIN 23 237 - -
Psa2g4036 250 ProSiteProfiles AP2/ERF domain profile. 131 189 IPR001471 GO:0003700|GO:0006355
Psa2g4036 250 PRINTS Ethylene responsive element binding protein signature 132 143 IPR001471 GO:0003700|GO:0006355
Psa2g4036 250 PRINTS Ethylene responsive element binding protein signature 155 171 IPR001471 GO:0003700|GO:0006355
Psa2g4036 250 Pfam AP2 domain 131 181 IPR001471 GO:0003700|GO:0006355
Psa2g4036 250 Gene3D AP2/ERF domain 130 192 IPR036955 GO:0003700|GO:0006355
Psa2g4036 250 PANTHER DNA-BINDING DOMAIN 23 237 IPR044808 GO:0003700|GO:0009873
Psa2g4036 250 SMART rav1_2 131 195 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4036 Psa-Chr2 416845331 416847293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4036 8 224 AP2-EREBP Transcription Factor Family AT4G17500 54.545 8.59e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa2g4036 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4036 K09286 - gmx:100819649 298.516