Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4031 ATGGTGAAGATAACTCTTGGTACCTTTGATGACTCTTTTAGCATTGCCTCACTTAAGGCCTATCTATCAGAATTTCATGCCACTTTGATTTTCGTGTTTGCTGGAGTTGGATCAGCCATTGCTTACAATGACCTAACATCAGATGCAGCTTTGGATCCAGCTGGTCTAGTGGCAGTAGCTGTGGCTCATGCATTTGCACTATTTGTTGGTGTGTCCATAGCAGCCAACATCTCAGGTGGACATTTGAACCCTGCTGTCACTTTCGGATTAGCTATTGGAGGCAACATCACCATCCTAACTGGTCTCTTCTATTGGATTGCCCAATTACTCGGCGCAATCCTTGCATCTCTCCTCCTCAGCTTCGTCACCGGAAAGAGTGTTCCAACACATGGAGTTGCTGCTGGATTGAACCCTCTTGCAGGATTAGTGTTTGAGGTTATTATTACATTTGGGTTGGTTTACACTGTTTATGCCACAGCAGTTGACCCCAAAAAGGGTTCATTGGGAACCATTGCACCCATTGCTATTGGGTTTGTTGTGGGTGCCAACATCTTGGTGGCCGGTCCATTCAGTGGCGGTTCAATGAACCCGGCTCGCTCATTCGGTCCAGCTGTGGTTAGTGGAAACTTTGCTGATAACTGGATCTATTGGGTTGGACCATTGATAGGAGGAGGCTTGGCTGGGTTGATTTACGGTGACATCTTCATTGGTTCATATGCTCCAGCACCAGCAACTGAAACATACCCTTAA 750 0.4653 MVKITLGTFDDSFSIASLKAYLSEFHATLIFVFAGVGSAIAYNDLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTFGLAIGGNITILTGLFYWIAQLLGAILASLLLSFVTGKSVPTHGVAAGLNPLAGLVFEVIITFGLVYTVYATAVDPKKGSLGTIAPIAIGFVVGANILVAGPFSGGSMNPARSFGPAVVSGNFADNWIYWVGPLIGGGLAGLIYGDIFIGSYAPAPATETYP* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4031 249 TIGRFAM MIP: MIP family channel proteins 24 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa2g4031 249 CDD MIP 19 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa2g4031 249 SUPERFAMILY Aquaporin-like 15 236 IPR023271 -
Psa2g4031 249 Pfam Major intrinsic protein 14 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa2g4031 249 PANTHER AQUAPORIN-8 1 249 IPR034294 -
Psa2g4031 249 PANTHER AQUAPORIN TIP2-2-RELATED 1 249 - -
Psa2g4031 249 Gene3D Glycerol uptake facilitator protein. 2 240 IPR023271 -
Psa2g4031 249 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Psa2g4031 249 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa2g4031 249 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa2g4031 249 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa2g4031 249 PRINTS Major intrinsic protein family signature 144 162 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa2g4031 249 PRINTS Major intrinsic protein family signature 177 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa2g4031 249 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4031 Psa-Chr2 416640482 416642139 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4031 1 246 Major Intrinsic Protein MIP AT5G47450 78.138 4.99e-135 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4031 K09873 - gmx:100527333 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g4031 2 416640482 416642139 Psa2g4031 2 416640482 416642139 ECH