Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4019 ATGGAACAAATTCATGTCCCTTTAGAAAACGAAATTCAACTAACCACTTCCATTTCTTCTTCTTCCTCTTCCTCCATTGAAGATAACAACAAAACCAAACCCAAAGGTGATGGAAAACACCCTTTATATCGTGGAGTTCGAATGCGTCATTGGGGTAAATGGGTTTCGGAAATTCGAGAGCCCAAGAAAAAATCCAGAATCTGGCTCGGCACTTTCCCGACTCCAGAAATGGCGGCCCGAGCACACGACGTTGCGGCCCAAGCCATCAAAGGTAGTTCGGCTTACCTTAACTTCCCCGAATTAGCTGACCAACTTCCACGCCCGGCTACTAATTCTCCTAAGGATATTCAAGCCGCCGCCGCAAAAGCAGCTTCTATGGAGGCCCAAGACTTAAAAGGATTGTTAACTGAGGAGGATGACACGTTTTATGACCTCCCTGATCTGTTACTCGATTCAAATAAGAATTCAAGTGAGCTTCATTACTCTTCTATCTCTGAGCCGTGGCTCCTGGCTGGAGCTGAACATCCAAGCTCGGGCTTTGGGATGGATGAGCCTTTCCCGTGGGAGTCATACTAA 576 0.4688 MEQIHVPLENEIQLTTSISSSSSSSIEDNNKTKPKGDGKHPLYRGVRMRHWGKWVSEIREPKKKSRIWLGTFPTPEMAARAHDVAAQAIKGSSAYLNFPELADQLPRPATNSPKDIQAAAAKAASMEAQDLKGLLTEEDDTFYDLPDLLLDSNKNSSELHYSSISEPWLLAGAEHPSSGFGMDEPFPWESY* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4019 191 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Psa2g4019 191 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
Psa2g4019 191 CDD AP2 41 101 IPR001471 GO:0003700|GO:0006355
Psa2g4019 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 19 172 - -
Psa2g4019 191 MobiDBLite consensus disorder prediction 1 42 - -
Psa2g4019 191 MobiDBLite consensus disorder prediction 9 29 - -
Psa2g4019 191 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Psa2g4019 191 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Psa2g4019 191 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Psa2g4019 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 19 172 - -
Psa2g4019 191 Pfam AP2 domain 41 91 IPR001471 GO:0003700|GO:0006355
Psa2g4019 191 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4019 Psa-Chr2 416302595 416303400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4019 31 186 AP2-EREBP Transcription Factor Family AT2G44940 46.190 9.19e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa2g4019 AP2 8.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4019 - - gmx:100101914 222.631