Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4005 ATGGGTAAACAAGGACCTTGCCATCACTGTGGAGTTACAATCACACCACTTTGGCGCAATGGACCACCAGAGAAGCCAATACTATGCAATGCTTGCGGTTCTCGGTGGAGGACAAAGGGAACACTTGCAAATTATACGCCTTTACATGCTCGAGCTGAAACTGATGATTTTGATGATCAAAGGCATTCCAGGGTTAAGAGCATATCGTTAAACAAGAACAAGGAAATGAAATTGCTCAAACGGAAGCCGAACCATGATAATGTAGTATCTGGTGGAATTGCATCCAGTTACAACCATGGATTCCAGAAGGCTGGTGATGAAGATATGAGCAACCGATCAAGTTCGGGATCAGCCTTGTCTAACTCAGGAAGCTGTGCACAATTTGGCGGAACAGATGCTAGTGATCTGACAGGACCTGCCCAGTCAGTAACCTGGGATGCCACAGTACCTTCAAAAAAGAGGACATGTGTTGGTCGTGCAAACCATTCCTCCGTTGAGGAGTTCACAAAAGAGTTGTGCTCTATTCTTCATGAACAACAATCATATTTTTCTGCGTCTTCTGAAGACGATCTTCTTTACGATAATGAAGCGCCAATGGTCTCAGTTGAGATAGGACATGGAAGTATACTCATTAGGCATCCTAGCTATGTAGCTCGCGACGAAGAGTCTGAGGCTAGCTCTCTTTCATTTGATAATAGGCAATACCCAATGAGTGACACATATTCTTATTCTGGCGCCGTTCCTATGCATAATGGTTCCACTCGGACAAACTTCTCATCTCAGGGAGCTGAAAAGGTAAGGAACTCAGTTTTCCAAGGAATGAAGCAGGGGCAACTTAAAAGTGACAAGTCTCACCTTGAAAGAGCACAAATCCTTGGAAATCATGATTCACCCCTGTCCTCAATAGATTTAAATGATGTTGTAAACTATGAAGAGTTTTTGCGAATCTTGACAAATGAAGAGCAGCAGCAATTACTGAAGTTTCTTCCTGTGGTTGACACCGCTAAACTTCCTGATAGCCTCAAGGTCATGTTCGAGAGCTCTCAATTCAAGGAGAACTTAACTTATTTTCAGCAGCTTCTTGCGGAAGGTGTCTTTGATATCTCTTTGTCGGGGGCAAAACCTGAAGACTGCAAGACTTTGATAAGATACGCACTGTCTAATCTATCAAAGTCAAAATGGGCCGAACACTACCATCATATCAAGAGATGTAAAAGTCGAGCTGAAAAATCTGATACTTTGGGATCTGCTGGTATAGCGTCGACCAATGTTGCAAACATGAAAAGAATGCGTGATAGCAGAAATCAGAACTTTCCAGAGGTAAAGACAATAATGAGGAGCCCGAAAAGAATTATCACAAAGTCTGGTTATGAGGGCAAAGTTAAAGATGCTGGCAGTTGCTATAATCCAAAAAGCCTATTTCCTTTGCCTCCTGATGCTAGCTCAAACTTGCTAGATTCTTTTAACTTTGCGGACGACAGTTCAGATCAGGATCTGCTTCTAGAAGTGCCTTCTAATAATTCTTTTCCACAGGCAGAACTATTGCATCCAAATTCGAGCTTTGGTGCTCAAGCAAGCACCAGCAGTAGCTCAGCTTACTCACATCTTGTGAAACATTAA 1620 0.4265 MGKQGPCHHCGVTITPLWRNGPPEKPILCNACGSRWRTKGTLANYTPLHARAETDDFDDQRHSRVKSISLNKNKEMKLLKRKPNHDNVVSGGIASSYNHGFQKAGDEDMSNRSSSGSALSNSGSCAQFGGTDASDLTGPAQSVTWDATVPSKKRTCVGRANHSSVEEFTKELCSILHEQQSYFSASSEDDLLYDNEAPMVSVEIGHGSILIRHPSYVARDEESEASSLSFDNRQYPMSDTYSYSGAVPMHNGSTRTNFSSQGAEKVRNSVFQGMKQGQLKSDKSHLERAQILGNHDSPLSSIDLNDVVNYEEFLRILTNEEQQQLLKFLPVVDTAKLPDSLKVMFESSQFKENLTYFQQLLAEGVFDISLSGAKPEDCKTLIRYALSNLSKSKWAEHYHHIKRCKSRAEKSDTLGSAGIASTNVANMKRMRDSRNQNFPEVKTIMRSPKRIITKSGYEGKVKDAGSCYNPKSLFPLPPDASSNLLDSFNFADDSSDQDLLLEVPSNNSFPQAELLHPNSSFGAQASTSSSSAYSHLVKH* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4005 539 PANTHER GATA TRANSCRIPTION FACTOR 26 1 538 - -
Psa2g4005 539 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Psa2g4005 539 Gene3D - 286 380 IPR038108 -
Psa2g4005 539 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Psa2g4005 539 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Psa2g4005 539 Pfam Asx homology domain 283 375 IPR028020 -
Psa2g4005 539 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Psa2g4005 539 Gene3D - 3 86 IPR013088 GO:0006355|GO:0008270
Psa2g4005 539 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Psa2g4005 539 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 295 407 IPR044867 -
Psa2g4005 539 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Psa2g4005 539 PANTHER OSJNBB0038F03.10 PROTEIN 1 538 IPR044589 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4005 Psa-Chr2 415201346 415206093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4005 1 516 C2C2-Gata Transcription Factor Family AT4G17570 51.705 4.33e-155 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Psa2g4005 ASXH 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4005 - - gmx:100798504 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g4005 2 415201346 415206093 Psa4g1762 4 125265391 125270718 PCT