Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4004 ATGACAACATCAATGCCAGTCTGTAATGAACAATCTGAAGAAGAATTTGGGAAGCCGATGATGGAACTTGGAGACTCTACTGTCCTTGCTCGGCCCAAGTTTAAGCGCCGTATAATTTGTGCTGTTCGTGATTATCCAGAAGGATGTGGGCCGTTTGGTTCTGCTGATGGTACATCTGTTGAGGATAAGAGTAGCGAAGATTTGGAGTGTGATGCTGTTACTCCGGACCATCCAAATGATTCTCAACATTCGGATCACGAAAATAATTTGGTTGTTACAGAGACTATTGAATTAACAAGTGAATGCAGTTTGAAGAAGGAAGATCCTGTGATTTTATCTGATCAAGTGGCGTTGGCGGGCATGGAAACTTTGGATGCAGAATTTGCTACAGAAAGCTCTAGTTTGAAGAAGGAAGTTCCTGTGATCTTGTCTGATCAAGTGGCAGTGGCGGGCATGGAAACTTTGGGTGCAGAATTTGTTACAGAAAGCTCTAGTTTGAAGATGGAAGATCCTGTGATCTTGTCTGATCAAGTGGCATTGGCTGGCATGGAAACTTTGGGTGCAGAATTTGCTACAGAAAGCTCTAGTTTGGAAAAGGAAGTTCCTGTGGTTTCATCTCATCTAGTGGATGAACCTATTTTGGATAATGACGAACATGCAAATGTGGCGTTGGTGGGCATGGAAACTTTGGACGGGGAATCTGCACCTGACATCAGTAGTTTGAAGAAGGAAAATTCAACAGTTTCTTCCCATAAAGTGGATGGATCTACTCTGGCTAATGATGAACCAGCTAAACTGACATTGGTGGGCACGGAAACTTTGAATGTGGAATTTGCAATACAGGACTACGTAAAACAAGAGTCCTTATATATGTCAAAGGCATCGTCTCTAGTTGGTGAGTCAGCTATGTCTGATGACTCAAAATCCTCGTCATCCAATATCAATATAGGTGGTTCTGGGGCTTGTATGGAGGAGACTGTAACTAGAAGGTATCCTCCTCGTAGAAATTTTGCAGCGGTCAGAGACTTTCCACGTTTATGTGGGCGCAATGCTCCTCGTCTTACTAAGGATGAGTGTTTAAAGGAGCTCTCGTCTCTGAATGAAAAGAGAGTGGGTCAACAAAACTTGGCTGTAGATGCCAGTCTGTTGAAAAAAGTTGCAGACACTGATGCAAAAGAAGCGGAAAATAACAAGAGAAAGCCCGTTAACATCGTTCAAGCTGGCTCTGAAGAAGAGAATAATGCTACACAGAGAGTCAAGAAGCTGGATGTATTTGAACCATCTTCTGAGAGGAGACTGGCACTGGATAATACAAGAGAAAAGAGCACTAAACTTCCCGAAAAACGTAATCACCATCAGGTTAACATAAATTCCAAGGCAGTGGCTAAAGAGGAAGTCATGAGCACTGTACAGGTTGAGGGAACATCAGGGCTAGATATTTACTGCCCAGAAGTCCAGAGTCCTGAACCAAAACCTTTGGCTATGTCAGGACAGGAAGTAGTGCTAGGTTTGATGTCTAAATCAGAATGTCCTTGGAGATCTGAAGTTAGTTCATCCAAATTTAAACCAACATCAATAGATGGTACAGAAGAAAAGAAGGTTAAGAAAGTTGATTTTTATGCCCAGCTAGACAGGTCTAAAACTGCTGTCAAGACAAAAGATATACGGCGTCATTCTGGGCATGAGCCATTGAAAAAGAAAAAATTAAACTCCACTTCTGATGACATTGGTCAATTAGTAAGACGGGAGAAGAATTCTCTAGACCGTAATGAAAATAAAAAAGACTTTAAAAGTGTTCCAAATTCACATGGACCGAGTGGCTTTGTTCCTCCTCTTGACCTTAGTAATTTCAGTGGTCATGAGAATGATTCAGCAACTCGGAATGAAGTGAGGAAAGTATTGCGCCTGTTCCAAGCGGTTTCTAGAAAGCTTTTGCATGAAGCGGAAGCAAAAGCAAAGTCAAATGATAAAGAAAGAAAGAGGGTTGATTTACAAGCTTCGAAGATGCTTAAGGAGAACGGGAACTTTGTTAACTCAGGGAAGCAAATATTGGGACCTGTCCCCGGGGTTGAAGTTGGTGATGAATTTCAATACAGAGTAGAGCTTAATATAATTGGCCTTCATCGCCAGATTCAGGGTGGTATAGATTATACGAAGCACAATAATAAGATCCTTGCAACTAGTATTGTTGCGTCGGGGGGCTATGCTGATGATTTAGATAATACGGATGTTTTGATATATACAGGGCAGGGTGGAAATGTGATGAGCAATGGTAAAGAGCCAGAAGATCAGAAGCTTGAAAGGGGCAATCTTGCATTGAAGAACAGTAGTGAGGAAAAGAATCCTGTTAGGGTGATACGAGGCTCCGAATCATCGGATGGAAAAAGCAAGATATATGTTTATGATGGGCTGTATCTAGTTGAGTCAGCTTGGCAGGATATGGGGACCCATGGGAAGCTGGTTTATAGGTTTCGCTTGCGAAGAATCCCGGGTCAACCGGAGCTTGCCTTGAAGGAAGTGAAAAAATCTAATAAGTTCAAAACAAGAGAAGGTCGATGTGTTGAAGATATTTCCTGCGGGCAAGAGAGAATTCCCATATGTGCTGTGAACACCATAGACGGCGAGAAACCCCCACCATTTAAGTACATAAAGAAGATGATATATCCTGATTGTTGCAACCTTGTCCCTCCAGAAGGCTGTGGTTGTACTAATGGATGCTCGGACCGTGCGAAATGCTCTTGTGTTCGAAAAAACGGAGGGGAGATTCCATTTAATTATAATGGGGCTATTGTAGCAGCAAAGCCTCTAGTCTACGAGTGTGGGCCTAAATGCAAGTGCCCTTCAACCTGCTATAACAGAGTCAGCCAACATGGCATCAATATCCAACTTGAAATTTTTAAAACCAATTCAAGGGGATGGGGTGTTAGATCCCTAAATTCCATCGCTTCAGGAAGTTTTATCTGTGAATATATAGGAGAGCTTCTTGAAGACAAGGAAGCTGAACAAAGAACCGGCAATGATGAGTATCTTTTTGATATTGGAAATAAAAACAACAATACTCTTTGGGACGGACTTTCGACCCTTTTGCCCGATTCACAGTCACATTCTTGTGAAGTAGTGAAGGATGGTGGCTTCACTATCGATGCTGCTCAGTATGGTAATGTGGGGAGATTCATCAACCATAGTTGCTCCCCTAATCTTTATGCTCAGAATGTCCTTTATGATCATCATGACAACAGGGTTCCTCACGTCATGTTATTTGCCGCCGAGAATATTCCTCCCTTGCAAGAGCTGACTTACGACTACAACTACATGATAGATCAAGTTCTTGATTCCAATGGCAATATCAAAAAGAAGTTCTGCTATTGTGGTTCTGTGGACTGTACTGGTTTCCTCCGGGGGAGGTAA 3408 0.4231 MTTSMPVCNEQSEEEFGKPMMELGDSTVLARPKFKRRIICAVRDYPEGCGPFGSADGTSVEDKSSEDLECDAVTPDHPNDSQHSDHENNLVVTETIELTSECSLKKEDPVILSDQVALAGMETLDAEFATESSSLKKEVPVILSDQVAVAGMETLGAEFVTESSSLKMEDPVILSDQVALAGMETLGAEFATESSSLEKEVPVVSSHLVDEPILDNDEHANVALVGMETLDGESAPDISSLKKENSTVSSHKVDGSTLANDEPAKLTLVGTETLNVEFAIQDYVKQESLYMSKASSLVGESAMSDDSKSSSSNINIGGSGACMEETVTRRYPPRRNFAAVRDFPRLCGRNAPRLTKDECLKELSSLNEKRVGQQNLAVDASLLKKVADTDAKEAENNKRKPVNIVQAGSEEENNATQRVKKLDVFEPSSERRLALDNTREKSTKLPEKRNHHQVNINSKAVAKEEVMSTVQVEGTSGLDIYCPEVQSPEPKPLAMSGQEVVLGLMSKSECPWRSEVSSSKFKPTSIDGTEEKKVKKVDFYAQLDRSKTAVKTKDIRRHSGHEPLKKKKLNSTSDDIGQLVRREKNSLDRNENKKDFKSVPNSHGPSGFVPPLDLSNFSGHENDSATRNEVRKVLRLFQAVSRKLLHEAEAKAKSNDKERKRVDLQASKMLKENGNFVNSGKQILGPVPGVEVGDEFQYRVELNIIGLHRQIQGGIDYTKHNNKILATSIVASGGYADDLDNTDVLIYTGQGGNVMSNGKEPEDQKLERGNLALKNSSEEKNPVRVIRGSESSDGKSKIYVYDGLYLVESAWQDMGTHGKLVYRFRLRRIPGQPELALKEVKKSNKFKTREGRCVEDISCGQERIPICAVNTIDGEKPPPFKYIKKMIYPDCCNLVPPEGCGCTNGCSDRAKCSCVRKNGGEIPFNYNGAIVAAKPLVYECGPKCKCPSTCYNRVSQHGINIQLEIFKTNSRGWGVRSLNSIASGSFICEYIGELLEDKEAEQRTGNDEYLFDIGNKNNNTLWDGLSTLLPDSQSHSCEVVKDGGFTIDAAQYGNVGRFINHSCSPNLYAQNVLYDHHDNRVPHVMLFAAENIPPLQELTYDYNYMIDQVLDSNGNIKKKFCYCGSVDCTGFLRGR* 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4004 1135 MobiDBLite consensus disorder prediction 550 605 - -
Psa2g4004 1135 SUPERFAMILY PUA domain-like 667 841 IPR015947 -
Psa2g4004 1135 ProSiteProfiles YDG domain profile. 685 828 IPR003105 -
Psa2g4004 1135 ProSiteProfiles Post-SET domain profile. 1117 1133 IPR003616 -
Psa2g4004 1135 SMART G9a_1 680 832 IPR003105 -
Psa2g4004 1135 Gene3D SET domain 849 1132 IPR046341 -
Psa2g4004 1135 ProSiteProfiles Pre-SET domain profile. 898 958 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa2g4004 1135 SMART preset_2 854 945 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa2g4004 1135 CDD SET_AtSUVH-like 878 1104 - -
Psa2g4004 1135 Pfam Pre-SET motif 857 953 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa2g4004 1135 Gene3D - 668 848 IPR036987 -
Psa2g4004 1135 SUPERFAMILY SET domain 844 1104 IPR046341 -
Psa2g4004 1135 ProSiteProfiles SET domain profile. 961 1103 IPR001214 GO:0005515
Psa2g4004 1135 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6-LIKE ISOFORM X1 594 1130 - -
Psa2g4004 1135 Pfam SET domain 972 1103 IPR001214 GO:0005515
Psa2g4004 1135 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 81 1134 IPR025794 GO:0016571
Psa2g4004 1135 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 594 1130 - -
Psa2g4004 1135 Pfam SAD/SRA domain 684 832 IPR003105 -
Psa2g4004 1135 MobiDBLite consensus disorder prediction 550 598 - -
Psa2g4004 1135 SMART PostSET_3 1117 1133 IPR003616 -
Psa2g4004 1135 SMART set_7 961 1109 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4004 Psa-Chr2 415182434 415187182 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4004 621 1130 Su(var)3-9 homologs AT5G04940 40.530 6.40e-116 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa2g4004 SAD_SRA 4.6e-51 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4004 K11420 - gmx:100803378 1137.09