Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4003 ATGGAACTTAATTTTAAGAGCCAAATTGGTTTTGTTTCTGTCATAATATTGCTCTTACCTATCCTGTGTAACTCTCAAGACTCTTCTTATATTTGCTCTAGAGCAACCTATTATGGTAGCCCAGATTGCTATGGAAATCCAAGGGGAGCTTGTGGCTATGGTGATTATGGACAAACAGTAAATGATGGCAATGTTGCAGGAGTGTCTTGGTTATGGAAGAATGGATCTGGTTGTGGTGCATGCTACCAAGTGAGGTGCAAAATAGCAGGATTGTGTGATGAGAATGGAGCATATGTGGTGGTGACTGATTATGGTGTGGGAGATAGGACAGACTTCATCATGAGTCCACGTGGCTATTCAAGATTGGGCAGAAATGCTGATGCATCTGCAGAACTTTTTAAATATGGTGTGGTGGATATAGAATATAAAAGAGTCCCTTGCAAATATAATGGTTATAATGTGTTGGTAAAGGTCCATGAACGTAGTAAAAACCCTCACTACTTGGCCATTCTCATTCTCTATGTTGGTGGAACAAATGATGTAACTGATGTTCAATTGTGGCAGGAGGATTGTCAAGAGTGGAGGCCAATGCGTAGGGTGTTTGGGGCGGTGTTTGATGCTGAGAACCCTCCAAGAGGTGAGATCAAGTTGAGGCTCCAAGTGAGTGGTAGTGCTGGCCTTTATTGGGTGCAGTCCAAGAATGTTATTTCTAGCGATTGGGAAGCTGGTGCTGTTTACGACTCACAAATTCAGTTTGATTAA 762 0.4213 MELNFKSQIGFVSVIILLLPILCNSQDSSYICSRATYYGSPDCYGNPRGACGYGDYGQTVNDGNVAGVSWLWKNGSGCGACYQVRCKIAGLCDENGAYVVVTDYGVGDRTDFIMSPRGYSRLGRNADASAELFKYGVVDIEYKRVPCKYNGYNVLVKVHERSKNPHYLAILILYVGGTNDVTDVQLWQEDCQEWRPMRRVFGAVFDAENPPRGEIKLRLQVSGSAGLYWVQSKNVISSDWEAGAVYDSQIQFD* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4003 253 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 252 - -
Psa2g4003 253 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Psa2g4003 253 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Psa2g4003 253 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Psa2g4003 253 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Psa2g4003 253 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Psa2g4003 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 248 IPR007117 -
Psa2g4003 253 PANTHER EXPANSIN-B3 4 252 - -
Psa2g4003 253 Pfam Lytic transglycolase 65 142 IPR009009 -
Psa2g4003 253 Pfam Expansin C-terminal domain 156 236 IPR007117 -
Psa2g4003 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 152 IPR007112 -
Psa2g4003 253 Gene3D - 148 249 IPR036749 -
Psa2g4003 253 Gene3D - 22 147 IPR036908 -
Psa2g4003 253 SUPERFAMILY PHL pollen allergen 153 248 IPR036749 -
Psa2g4003 253 SUPERFAMILY Barwin-like endoglucanases 18 151 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4003 Psa-Chr2 415180522 415182370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4003 11 250 Expansin Gene Family AT4G17030 62.241 4.78e-112 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4003 - - gmx:100802855 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g4003 2 415180522 415182370 Psa4g1768 4 125372307 125373507 PCT