Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3998 ATGAATTTTCAACAACTTCCTCATCTCTTTCCGCAACAGATTCCTAATTTGAGAAATTCCAGTGTAATGAAGACTAATATTTCGAAGGAAGAGACTAAATGTGCACAGATGACAATCTTTTATGATGGGAAAGTAGTTGTATTTGATGATATTCCAGCTGAAAAAGCCAAGGACATTATGGTCTTTTCCGCCACCAATTATGTTCAAGAGCATCCTCAAGTAGCATCCTCACCTGTTATTTATGATTTACCAATGACTAGAAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGAAAGGATAGAATTGGTGCAAGGGGACCATATCAAACAAGTAAACCAGCAGTGACTCTTGGTAAGCCAATTGATGAATATATGTCATGGCTTTCTTTGGCATCACAATCACCACAAGATCACAAATCTGAGTGTAGCTCTACCACTGTCTTGTTTTAA 450 0.3756 MNFQQLPHLFPQQIPNLRNSSVMKTNISKEETKCAQMTIFYDGKVVVFDDIPAEKAKDIMVFSATNYVQEHPQVASSPVIYDLPMTRKASLHRFLEKRKDRIGARGPYQTSKPAVTLGKPIDEYMSWLSLASQSPQDHKSECSSTTVLF* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3998 149 ProSiteProfiles Tify domain profile. 30 65 IPR010399 -
Psa2g3998 149 Pfam Jas motif 84 109 IPR018467 -
Psa2g3998 149 SMART tify_2 30 65 IPR010399 -
Psa2g3998 149 PANTHER PROTEIN TIFY 10A 8 131 - -
Psa2g3998 149 Pfam tify domain 35 60 IPR010399 -
Psa2g3998 149 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 8 131 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3998 Psa-Chr2 414984463 414985892 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3998 29 133 Tify Gene Family AT1G19180 37.313 1.53e-22 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Psa2g3998 tify 1.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3998 K13464 - gmx:100306332 140.198