Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3990 ATGAAGTGTTTCTTCTTCAAAAAAAACTCCAAACCAGACCCAAATTTAAACCCTAAAAAGAAGAAAAATCAAACAAAAAATTCCACCAGTGCGCAGTCATCGCCATCACCAAGAAGCATAAAAGAGATATACAAAGAGAATGAACACAATTTCAGAGTTTTCACTGTGCAAGAGCTTGTAAATGCAACAAATGGTTTCAATAAGATCCTGAAAATTGGAGAAGGTGGTTTTGGGAAAGTGTATAGAGGAACAATTTCTCCTGAAAATGGAATAGGTGACCAAATTGTGGTTGCTATAAAAAAACTCAACACTCGAGGACTTCAGGGGCATAAAGAGTGGCTTGCAGAGGTACAATTTTTGGGAATTGTGAATCATCCGAATTTGGTGAAACTTTTGGGATACTGTTCTTTAGATGGTGAAAAGGGGATCCAACGGTTGTTAGTGTATGAGTTTATGCCTAATAGGAGTTTAGAAGATCATCTTTTCAGCCGTTCTTTACCTACTTTGCCTTGGAAAATAAGATTGCAGATTATGCTTGGTGCTGCTCAAGGATTACAGTATCTACATGAAGGATTGGAGATTCAGGTGATCTACAGAGATTTTAAATCTTCAAATGTGCTGTTGGACAAGAAATTCCATCCCAAACTCTCAGATTTTGGTCTTGCTAGGGAGGGCCCAACAGGTGATCAGACTCATGTCTCCACTGCAGTAGTTGGGACAAGGGGTTATGCGGCGCCGGAGTATATTGAAACAGGTCATTTAAAATCAAAGAGTGACATTTGGAGTTTTGGTGTGGTACTGTATGAGATTCTCACAGGAAGACGAACAATAGAGAGAAATCTTCCAACAGCTCAACAAAAGCTTATAGAATGGGTTAAAAACTACCCTGCAGATAGCGGCAGATTCACCTTGATAATGGATCCTCGACTTGCGAAACAATATTCTGTTAAGGCAGCTAGGAAAATTGCTAAGTTGGCAGATAGTTGCTTGAAGAAGAATGCTGAAGATAGGCCATCAATGAGTCAGATTGTTGAAAGTTTGAAACAAGCATTGCAATGTTCATAA 1065 0.3906 MKCFFFKKNSKPDPNLNPKKKKNQTKNSTSAQSSPSPRSIKEIYKENEHNFRVFTVQELVNATNGFNKILKIGEGGFGKVYRGTISPENGIGDQIVVAIKKLNTRGLQGHKEWLAEVQFLGIVNHPNLVKLLGYCSLDGEKGIQRLLVYEFMPNRSLEDHLFSRSLPTLPWKIRLQIMLGAAQGLQYLHEGLEIQVIYRDFKSSNVLLDKKFHPKLSDFGLAREGPTGDQTHVSTAVVGTRGYAAPEYIETGHLKSKSDIWSFGVVLYEILTGRRTIERNLPTAQQKLIEWVKNYPADSGRFTLIMDPRLAKQYSVKAARKIAKLADSCLKKNAEDRPSMSQIVESLKQALQCS* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3990 354 PIRSF ILK 52 354 - -
Psa2g3990 354 PIRSF ILK 6 75 - -
Psa2g3990 354 ProSiteProfiles Protein kinase domain profile. 66 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g3990 354 CDD STKc_IRAK 72 349 - -
Psa2g3990 354 MobiDBLite consensus disorder prediction 21 39 - -
Psa2g3990 354 SUPERFAMILY Protein kinase-like (PK-like) 48 347 IPR011009 -
Psa2g3990 354 PANTHER RECEPTOR-LIKE KINASE PLANT 13 352 - -
Psa2g3990 354 PANTHER OS01G0588500 PROTEIN-RELATED 13 352 - -
Psa2g3990 354 Gene3D Transferase(Phosphotransferase) domain 1 152 353 - -
Psa2g3990 354 ProSitePatterns Protein kinases ATP-binding region signature. 72 101 IPR017441 GO:0005524
Psa2g3990 354 Pfam Protein kinase domain 67 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g3990 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Psa2g3990 354 Gene3D Phosphorylase Kinase; domain 1 46 151 - -
Psa2g3990 354 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3990 Psa-Chr2 414667748 414670610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3990 3 347 Glycoside Hydrolase AT3G07070 42.017 5.81e-94 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Psa2g3990 Pkinase 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3990 - K00924 gmx:100782248 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3990 2 414667748 414670610 Psa2g3990 2 414667748 414670610 ECH
Psa2g3990 2 414667748 414670610 Psa4g1795 4 126600627 126604037 PCT