Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3967 ATGGTTTGCACTGCCAATGATTTACAAGGATGGAAAGATTTTCCAAAGGGGCTTAGGGTTCTTCTCCTTGAAGGAGACAACAATTCTGCTTCTGAAATAAGAACAAAGCTTGAATCTATGGACTATAATGTTTCTATCTTCTACGATGAGAACGAAGCTTTGTCAGCGATCTCAACTAGTCCCAAAGGCTTCCATGTTGCCGTAGTCGAGGTGAGTACAAGCTGCCCTGATGGAGGTTTCAAGTTTCTCGAGAATGCGAAGGACTTGCCAACCATAATGACTTCGAACACTCATTGCCTGAATACAATGATGAAGTGCATTGCGCTTGGTGCAGTTGAGTTCCTAACAAAACCGCTCTCTGAGGATAAGCTGAAAAATATTTGGCAGCATGTGGTTCACAAGGCATTCAATGCTGATAAAAATGCTCCGTCTGAACCGCTAAAACCTGTCAAAGAATCCGTTGAGCCCATGTCGATAGATTTAGATAAGGTGTCCAAGTTTAGTGATAACGAACAAGAGCATTCTGCAGCGAGTGATAAATATCCGGCTCCTTCAACGCCACAATTAAAACAAGTTGCGAGGTTGGTGGATGATGGTGATTGCCATGAGCAGACTAATTGCTCAGTAGAAAAAGAAAGCGGAGAACATGATGGTAGTGAATGTAAATTTGTCGAAATTTCATGCGAGAATTTGAATGCCGAAAATTCTCCTCAACCAACGAAATCTCTGGTTAAGGAGGAAGAGGATTTTGCCAATAGTTCGAAGGGTGAGAGTGTTGTTTCAACGAATCCACATAGTAAAAAGGCTCTCGAAAACCCTGATGCTAACGCATCTCCAAATGAAACAAGTGTTCCTAAGGATTCATGTGAGAATAGAGCTAATCGGAAGAAGATGAAAGTAGACTGGACGCCCGACCTGCATAAAAAATTTGTGAAGGCAGTTGAACAACTAGGCATTGATCAAGCCATTCCGTCTCGTATATTGGAGTTAATGAAAGTCGACAGTTTGACAAGGCATAACGTTGCAAGCCATCTCCAGAAATATAGAATGCACAAGAGACAGATCTTGCACACGGACGAAGATCGAAAATGGCCTAATCAAAGAGATCCAACGCAAAGGAACTATTGTATGCAAAGACCAATCATGGCCTATCCGCCGTATCATTCTAATCACACCTTTCCTCCACATTCTGTATATCCTATGTGGGGAGGGCAGCCCGGAAGTCATACAGCCGGGGTACCGATTTGGGCTCCTCCTCCTCCTGGTTATCCTCTATGGCAACAACCAACAGAAAATTGGCATTGGAAGCCTTATCCGCCCGCGGTGCATGTGGATGCATGGGGTAACTCAATGTTGCCACCTCCTCAAGCTTCTTATTTTCCCTACACTCAAAATATAACCGGATTGCAAAATGCGAAAGCAATGGATTATAGATTCGGCACGCCGCGTAATTCCTTGGAGCATTATCCGGCAGAGGAAGTGGTGGACAAGGTTGTGAAAGAGGCAATAAACAAGCCATGGCTACCATTACCAATAGGACTGAAACCTCCATCAATGGATAGTGTTATGGCTGAACTCACCAAACAAGGTATCCCTTTTAGCAAGAGAAAGGGAAAGGATTGTAATTCTAAACCATGCTGA 1641 0.4357 MVCTANDLQGWKDFPKGLRVLLLEGDNNSASEIRTKLESMDYNVSIFYDENEALSAISTSPKGFHVAVVEVSTSCPDGGFKFLENAKDLPTIMTSNTHCLNTMMKCIALGAVEFLTKPLSEDKLKNIWQHVVHKAFNADKNAPSEPLKPVKESVEPMSIDLDKVSKFSDNEQEHSAASDKYPAPSTPQLKQVARLVDDGDCHEQTNCSVEKESGEHDGSECKFVEISCENLNAENSPQPTKSLVKEEEDFANSSKGESVVSTNPHSKKALENPDANASPNETSVPKDSCENRANRKKMKVDWTPDLHKKFVKAVEQLGIDQAIPSRILELMKVDSLTRHNVASHLQKYRMHKRQILHTDEDRKWPNQRDPTQRNYCMQRPIMAYPPYHSNHTFPPHSVYPMWGGQPGSHTAGVPIWAPPPPGYPLWQQPTENWHWKPYPPAVHVDAWGNSMLPPPQASYFPYTQNITGLQNAKAMDYRFGTPRNSLEHYPAEEVVDKVVKEAINKPWLPLPIGLKPPSMDSVMAELTKQGIPFSKRKGKDCNSKPC* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3967 546 MobiDBLite consensus disorder prediction 233 296 - -
Psa2g3967 546 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 294 353 IPR017930 -
Psa2g3967 546 MobiDBLite consensus disorder prediction 254 287 - -
Psa2g3967 546 SUPERFAMILY Homeodomain-like 296 354 IPR009057 -
Psa2g3967 546 Gene3D - 18 145 - -
Psa2g3967 546 MobiDBLite consensus disorder prediction 167 186 - -
Psa2g3967 546 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 537 IPR044825 GO:0003700|GO:0045893
Psa2g3967 546 SUPERFAMILY CheY-like 16 136 IPR011006 -
Psa2g3967 546 Pfam Myb-like DNA-binding domain 300 349 IPR001005 -
Psa2g3967 546 Gene3D - 293 355 - -
Psa2g3967 546 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 537 - -
Psa2g3967 546 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 297 352 IPR006447 GO:0003677
Psa2g3967 546 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3967 Psa-Chr2 413973299 413977899 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3967 1 531 Response Regulator Gene Family AT4G18020 48.479 4.04e-137 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Psa2g3967 Myb_DNA-binding 5.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3967 - - gmx:100784905 819.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3967 2 413973299 413977899 Psa4g1829 4 130452951 130454769 PCT