Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3966 ATGGCTGTTCAAGCTCAATACCCTTCCAATGCACTCTTTCTCAACGCCAAAAACAACCAACAAGGTGAATATGATTTTTCATTACAACAACAACAACATCAACCTGATCATCAATCAAATATGATCCTCTTCAACACTCCAGGCACTCATTCTCGAAAAAGAGGAAGAGAAACATCTCATAATATCATGAATCCCTTCTCTTTACAATCTCAATCTCCTCATCTCATAGACATTACTCAACTCCACAATCAACCACAACAAATTGTTTCTACCGGTTTAGGTTTATCCTTCGGCGATCAACAACAACATCAACAAAGACTACAATTGCAGCAACAACAGCAACAAAATCAACATGGATATGATACATCTCATTTCTTATCTCTATTGTCTCATGGCTTAGCCTCACAAATCAAACAACAAAAAGACGAAATAGACCAATTTCTTCAATCCCAGGGAGAAGAGTTACAACGGACATTAGAGGAAAAGAGACAGAGAAACTACCGGGCAATAATAAAAACAGCAGAAGAAACGGTGGCGCGTAGATTAAGAGAAAAAGAAATCGAAGTCGAAAAAGCCACGCGCAGGAACATAGAGTTAGAATCACGCGCGGCGCAGCTTAGAGCCGAATCACAAATATGGCAAGCGAAAGCGAAAGCGCAGGAAGCAACAGCTATATCTCTCCAAACGCAGCTGCATCAGGCTATGATGAGCACCGGCGCAGAAAACAGAGGCGAAGAAGGTTGCGGGCTATCGTGCGCTTTGGGTGTAGAAGGACACGCGGAAGATGCGGAATCGGGTTATATTGACCCGGAAAGGGCTGTGTCGGGTCCAAAATGTAGAGGCTGTGGAAAACGGGTTGCGTCGGTTGTTGTGTTGCCGTGCCGTCATTTATGTGTGTGCACCGAATGCGACGCCCGTTTCCGTGTTTGTCCCGTTTGTCTCACCGTTAAAAATTCAACGGTTGAGATTTATCTATCTTAG 981 0.4373 MAVQAQYPSNALFLNAKNNQQGEYDFSLQQQQHQPDHQSNMILFNTPGTHSRKRGRETSHNIMNPFSLQSQSPHLIDITQLHNQPQQIVSTGLGLSFGDQQQHQQRLQLQQQQQQNQHGYDTSHFLSLLSHGLASQIKQQKDEIDQFLQSQGEELQRTLEEKRQRNYRAIIKTAEETVARRLREKEIEVEKATRRNIELESRAAQLRAESQIWQAKAKAQEATAISLQTQLHQAMMSTGAENRGEEGCGLSCALGVEGHAEDAESGYIDPERAVSGPKCRGCGKRVASVVVLPCRHLCVCTECDARFRVCPVCLTVKNSTVEIYLS* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3966 326 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 325 - -
Psa2g3966 326 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 325 IPR017066 -
Psa2g3966 326 Pfam Zinc finger, C3HC4 type (RING finger) 278 315 - -
Psa2g3966 326 ProSiteProfiles Zinc finger RING-type profile. 279 313 IPR001841 -
Psa2g3966 326 Coils Coil 175 216 - -
Psa2g3966 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 326 IPR013083 -
Psa2g3966 326 PIRSF SBP1_RNase_bind 1 326 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3966 Psa-Chr2 413903945 413906555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3966 275 313 C3H Transcription Factor Family AT3G06140 41.860 6.12e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3966 K19042 - gmx:100779548 394.045