Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3957 ATGGATTCACGTGAACCACCGCAGCCTCCTCATCACCCTCACGGTCACCACTTTCAACCACCGTCGAACGTTGTGTTGATGGGACCCAATCCGTTCACCAACACTGCCCCGACTACCATGATGGCGCCTGCCACTGCTCGATTCCCTCTCTTCAACATGAACGCTAACCCTGCTAACCCTGCTAACCCTGCTAACCCTCCTCCTCATTCTGAGCCTTTCACCACCACCACCACCATCACCACTGTCAACACCACCACCAACACCACCACCACTGTTCCTCCAACATTGGTGCCATGCGTTGCTGGCACCACTGTTCCTCCAACATTGGTGCCATGCGTTGCTGGCTCCTCTGAGTCATTCAAGAAAAAGAGGGGTCGGCCAAGGAAGTATTTCCCTGATGACAGCACTGCTTTGGGCTTGGGCTCGGGTTCGGGCTCCGGCTCGGGTTCCGGGCAGGCTCTTGCTATGACCTCTCCTGATTCTTCAACTGCCAAGAAGAGTAAGAGGGGAAGAGGAAGGCCTCGTGGCTCTGTTAAAAAGAAGCTTGGAGATGATGGCTCTGTTTTCCGTCCACATGTGATCATGGTGAATCATGGAGAGGACATTTTTAAGAAAGTTATGGCCTTTAGTCAAGAAAGGGCGGGATCTGATACAGAGATGTGCGTTGTTTCTGCTGAAGGTTTGATTGGCACTGTTGCCCTTCATCAGGCGGGGAGCATTGTGGTTTTTGAGGGCCAATTTGAAATTATATCCCTGTCAGCCCAGTTAGTAGAATCTGACGACGGCAGTGGCCTTAAAAGAATGAGTAACTTGAAGATATCTGTAGGGGGTCCTGATTCACGCCTTTTGGGAGGTGTAGTTGCTGACAAGCTTGTTGCGGCGTCGACCGTAAAGGTCATAATGGGCTGTTTTAATTTGGATGGCAAAAAGACTAGCTCCAACAACCAGAAATCTGGGCCGTCTTCAACCCCACCATCCCATTTTGCTGCTTCTGGGACTCCAACTAGCCCTACATCTCAAGGGCCTTCATCTGAGTCCTCTGGTGACCATGAGAATAGTCCTTTTACTCAGGGACCTGGAGTCTACAACAATGCTAGTCAGGTCGATCAAAACATGATGATGTTCCACCACCCGCAAGTCTGGGCTCGCCAAACTCAGCAGTGA 1164 0.512 MDSREPPQPPHHPHGHHFQPPSNVVLMGPNPFTNTAPTTMMAPATARFPLFNMNANPANPANPANPPPHSEPFTTTTTITTVNTTTNTTTTVPPTLVPCVAGTTVPPTLVPCVAGSSESFKKKRGRPRKYFPDDSTALGLGSGSGSGSGSGQALAMTSPDSSTAKKSKRGRGRPRGSVKKKLGDDGSVFRPHVIMVNHGEDIFKKVMAFSQERAGSDTEMCVVSAEGLIGTVALHQAGSIVVFEGQFEIISLSAQLVESDDGSGLKRMSNLKISVGGPDSRLLGGVVADKLVAASTVKVIMGCFNLDGKKTSSNNQKSGPSSTPPSHFAASGTPTSPTSQGPSSESSGDHENSPFTQGPGVYNNASQVDQNMMMFHHPQVWARQTQQ* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3957 387 MobiDBLite consensus disorder prediction 118 183 - -
Psa2g3957 387 MobiDBLite consensus disorder prediction 310 367 - -
Psa2g3957 387 CDD DUF296 190 302 IPR005175 -
Psa2g3957 387 ProSiteProfiles PPC domain profile profile. 186 325 IPR005175 -
Psa2g3957 387 MobiDBLite consensus disorder prediction 1 20 - -
Psa2g3957 387 Gene3D - 190 317 - -
Psa2g3957 387 MobiDBLite consensus disorder prediction 139 163 - -
Psa2g3957 387 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 67 353 IPR039605 GO:0003680
Psa2g3957 387 Pfam Plants and Prokaryotes Conserved (PCC) domain 190 304 IPR005175 -
Psa2g3957 387 SUPERFAMILY AF0104/ALDC/Ptd012-like 187 304 - -
Psa2g3957 387 SMART AT_hook_2 168 180 IPR017956 GO:0003677
Psa2g3957 387 SMART AT_hook_2 121 133 IPR017956 GO:0003677
Psa2g3957 387 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 67 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3957 Psa-Chr2 413057204 413061343 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3957 121 310 AT-hook Motif Nuclear Localized (AHL) Family AT5G46640 45.320 2.19e-36 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3957 - - cam:101504328 275.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3957 2 413057204 413061343 Psa2g3957 2 413057204 413061343 ECH