Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3955 ATGCCTACAGATATTTCCATCACTACTACTCAGATCCAAAATTCATCACAATCACAATCTCAATCTCAACCAAACCCTAACATCATCACCACCACCACACCATCATCATCAACTTGGATGTGGAACCCTAAACAACAACAACATCAAGAACAAGAAGATGAAGATTCATGGGAGGTAAGAGCTTTTGCAGAAGACACAAGGAACATGATGAACACAACGTGGCCACCAAGATTCTACACCTGCACTTTTTGTAGAAGAGAGTTCCGGTCAGCTCAAGCTCTTGGCGGTCATATGAATGTCCACCGCCGCGACCGTGCTCGTCTCCATCAAAATCAACCACCGTTAAACTCCTCCTCTCATCATCCTTCTTCTCCATTCATACATATCCCTCCTCAAGAGCTTGTTGATGCTGGATTGTGCCTTTTTTACCATTCACCAAACCCTAATATTTCTTCCTTCAATGATTCTAATGGAGAATCTCCTTCAACTTTTCTCTCTATATCATCATCATCTTATCCAACAAACAACTTGATGATGCAAATGCAAATGCAAACTTGTTCTCCTCCATCTTTTCATTTTCAAGCTAATTCAGCTAGAAATTTGATTAACAATAGCATATCTTCTTTTTCTAACAAACCTGCTATCTGCACCTCCATTAATGATAAGGTTCATGAAATTGAAGAACTCGATCTTGAGCTACGTTTGGGGAACAAGCCATCACCGGCATGA 729 0.406 MPTDISITTTQIQNSSQSQSQSQPNPNIITTTTPSSSTWMWNPKQQQHQEQEDEDSWEVRAFAEDTRNMMNTTWPPRFYTCTFCRREFRSAQALGGHMNVHRRDRARLHQNQPPLNSSSHHPSSPFIHIPPQELVDAGLCLFYHSPNPNISSFNDSNGESPSTFLSISSSSYPTNNLMMQMQMQTCSPPSFHFQANSARNLINNSISSFSNKPAICTSINDKVHEIEELDLELRLGNKPSPA* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3955 242 PANTHER OS07G0101800 PROTEIN 40 237 - -
Psa2g3955 242 PANTHER ZINC FINGER C2H2-TYPE/INTEGRASE DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 40 237 - -
Psa2g3955 242 MobiDBLite consensus disorder prediction 1 46 - -
Psa2g3955 242 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Psa2g3955 242 Gene3D Classic Zinc Finger 66 125 - -
Psa2g3955 242 SUPERFAMILY beta-beta-alpha zinc fingers 76 106 IPR036236 -
Psa2g3955 242 SMART c2h2final6 79 101 IPR013087 -
Psa2g3955 242 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 106 IPR013087 -
Psa2g3955 242 MobiDBLite consensus disorder prediction 1 55 - -
Psa2g3955 242 Pfam C2H2-type zinc finger 79 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3955 Psa-Chr2 412901666 412903224 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3955 36 239 C2H2 Transcription Factor Family AT4G17810 40.865 5.33e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa2g3955 zf-C2H2_6 6.7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3955 - - lja:Lj2g3v1984740.1 213.772