Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3946 ATGGGAGGGGCTTCATTGCCGCCCGGTTTTCGTTTCCATCCAACTGATGAAGAACTGATAGGATATTACCTGAAAAGAAAAGTCGAGGGACTTGAAATTGAGCTTGAAGTTATACCTGTTGTTGATTTCTACAAATTTGATCCATGGGAGTTACCTGAGAAATCTTTCCTACCAAAAAGAGATATGGAATGGTTTTTCTTCTGTCCACGCGATCGCAAGTATCCGAATGGATCGAGAACAAATAGAGCCACCAAAGCTGGTTACTGGAAAGCCACAGGAAAAGACAGGAAGGTTGTGTGTGAGGCTAGTCCATTCGTTTCCACCGAGACTGTCACGGGTTACCGCAAGACCCTGGTTTTCTATTGCGGAAGAGCACCTTTAGGCGATCGAACCAATTGGGTCATGCACGAATATCGCCTCAACGATGATCCTAGTCAAGGCTCAGAGGGTGCTTTTGCTTTGTGCCGAGTTATTAAAAAGAATGAGAAGGCGAATGATTCCCAAGGGCATGGAGGAAAGAGAGTTAAAGCTAATGATGGGAGCAATTCCATTTCCACCGATGGAAATGAGGTTTCTTGTCGGGCAAGTCAAATGTGCAGTGGCAGTGAGAGTCATTATTCAAGTCCTATTAATTTCCCAAGCAATGTGCCTACTACGGCTGGATTTGAGCAAGCTTCCTCCGATACCAATCCTTCAACCTTCTGGCTCTCCCCCGACATGATTCTCGATTCTTCAAAGGACTACTCTCAAGTTCCGGTACAAGATCTTGATGGATGTTTCCCACAACAACATGACTTATTGAGTTCAATGACACCTTGGCAATCATTTGAACACACTGAAATCTCACCATGTTCATCCTACTCAAATTTTAACGCGGAAATTGAATTTTCTGACACTCTTAGTCGAATCGGTTGCATTTCACCCTACACGGGACAAGGAAGCTTCATGGACTTGCCTTACGAATGCTATGATCAAATTCCTTCATTTAGAGATCCAAACCAATTCTGA 1008 0.4395 MGGASLPPGFRFHPTDEELIGYYLKRKVEGLEIELEVIPVVDFYKFDPWELPEKSFLPKRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCEASPFVSTETVTGYRKTLVFYCGRAPLGDRTNWVMHEYRLNDDPSQGSEGAFALCRVIKKNEKANDSQGHGGKRVKANDGSNSISTDGNEVSCRASQMCSGSESHYSSPINFPSNVPTTAGFEQASSDTNPSTFWLSPDMILDSSKDYSQVPVQDLDGCFPQQHDLLSSMTPWQSFEHTEISPCSSYSNFNAEIEFSDTLSRIGCISPYTGQGSFMDLPYECYDQIPSFRDPNQF* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3946 335 Gene3D NAC domain 15 165 IPR036093 GO:0003677|GO:0006355
Psa2g3946 335 SUPERFAMILY NAC domain 4 160 IPR036093 GO:0003677|GO:0006355
Psa2g3946 335 MobiDBLite consensus disorder prediction 163 186 - -
Psa2g3946 335 Pfam No apical meristem (NAM) protein 7 140 IPR003441 GO:0003677|GO:0006355
Psa2g3946 335 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 335 - -
Psa2g3946 335 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 335 - -
Psa2g3946 335 ProSiteProfiles NAC domain profile. 6 160 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3946 Psa-Chr2 412539425 412542086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3946 1 295 NAC Transcription Factor Family AT4G17980 54.667 1.91e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa2g3946 NAM 1.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3946 - - adu:107487585 457.218