Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3942 ATGGCTACAGATATTGCCCTTCTTTCCATGACTACTACTCAGATCCAAAATTCATCACAATCACAATCAAACCCTAACACCACCAGCACCACCACACCATCACCATCAACTTGGATGTGGAACCCTAAACAACAACAACATCAAGAACAAGAAGATGAAGATTCATGGGAGGTAAGAGCTTTTGCAGAAGACACAAGGAACATGATGAACACAACGTGGCCACCAAGATCCTACACCTGCACTTTTTGTAGAAGAGAGTTTCGGTCAGCTCAAGCTCTTGGCGGTCATATGAACGTCCACCGCCGTGACCGTGCTCGTCTCCATCAAAATCAACCACCGTTAAATTCCTCCTCTCATCATCCTTCTTCTCCGTTCATACATATCCCTCCTCAAGAGCTTGTTAATGCTGGATTGTGCCTTTTTTACCATTCACCAAACCCTAATATTTCTTCCTTCAATGATTCTAATGGAGAATCTCCTTCAACTTTTCTCTCTATCTCATCATCATCTTATCCAACAAACAACTTCATGATGCACATGCAACCTTGTTCTCCTCCATCTTTTCATTTTCAGGCTAATTCAGCTAGAAATTTGATTAACAATAGCATCTCTTCTTTTTCTAACAAACCTACTATCTGCACCTCCATTGATAATAAGGTTCATGAAATTGAAGAACTCGATCTTGAGCTACGTTTGGGGAACAAGCCATCACCGGCATGA 720 0.4167 MATDIALLSMTTTQIQNSSQSQSNPNTTSTTTPSPSTWMWNPKQQQHQEQEDEDSWEVRAFAEDTRNMMNTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQNQPPLNSSSHHPSSPFIHIPPQELVNAGLCLFYHSPNPNISSFNDSNGESPSTFLSISSSSYPTNNFMMHMQPCSPPSFHFQANSARNLINNSISSFSNKPTICTSIDNKVHEIEELDLELRLGNKPSPA* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3942 239 PANTHER OS07G0101800 PROTEIN 39 234 - -
Psa2g3942 239 MobiDBLite consensus disorder prediction 12 54 - -
Psa2g3942 239 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 105 IPR013087 -
Psa2g3942 239 PANTHER ZINC FINGER C2H2-TYPE/INTEGRASE DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 39 234 - -
Psa2g3942 239 Pfam C2H2-type zinc finger 78 102 - -
Psa2g3942 239 SMART c2h2final6 78 100 IPR013087 -
Psa2g3942 239 MobiDBLite consensus disorder prediction 12 45 - -
Psa2g3942 239 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Psa2g3942 239 SUPERFAMILY beta-beta-alpha zinc fingers 75 105 IPR036236 -
Psa2g3942 239 Gene3D Classic Zinc Finger 66 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3942 Psa-Chr2 412379762 412381061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3942 36 236 C2H2 Transcription Factor Family AT4G17810 40.976 1.34e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa2g3942 zf-C2H2_6 5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3942 - - gmx:100818142 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3942 2 412379762 412381061 Psa2g3942 2 412379762 412381061 ECH