Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3937 ATGTCTTCATTGGAACCTGATTACGAAATCCCGCCGGCTCCAATATACAGGACCCCACCGATACTAGTAGCTTTCACCTTCACCATCCTCATCTTATTATTTGTGGCTTTCAGCATTGTGTATCTTTGTAAGTATTGTTTTCAAGGCCTTTTTCACACTTGGGCCTTACAACGCACAACCTCAGGTTCTCTCGTTCGTCTCTCGCCTGAGAGATCACCGCCTAGAGGACTCGATAATACCCTTCTAGATAAATTCCCAACTTTTGTTTACTCCTCCGTGAAATATCTGCGCGAGGAAAAGAGTTGCAGCTTGGAATGTGCCATTTGTTTGCTAGAGTTCGAGGATGATAGCATGCTTCGTCATTTAACTATCTGTTGTCATGTTTTCCATCAAGAATGTATTGACCTATGGCTTGAATCTCATAAGACATGTCCCGTTTGTCGAACCGATCTTGATTTACATCCGAACCAAACGGCGAAACAAGGGGACAATGACAACGACAACGAAAACAACAACAACAACAACGTTGATGTAGACGAGGGTATGATGCAATTACCATGTGATGCTATACATATTGATGTTGGAGAAGAGGAAAGAGACACTGTTGGTGAGATCACTGAAGCTCAAATAAATGCAAATTGCCAACATGATTGTGAAAACACGAGCATGCCACGAGGAGAAGAACCTAGGTTTTCAAAGTCACATTCAACGGGGCATTCTATAGTAATGATTAGAGGTGAAGAGAAAGATAATCCAAAATATACTTTGAGATTGCCTGAACATGTTATAAGGGGAGGGCACAACAGCTCTAAGAGTTGTACAACTTACAATGAAATGACATTGGCAGAGCCAACGCCTTGTAGTAACTGTGGTTTTGTTAAACCAGTAGTTGCCTCCTCTTCACTTGCTCATGCTCAAGACCATTGA 927 0.4207 MSSLEPDYEIPPAPIYRTPPILVAFTFTILILLFVAFSIVYLCKYCFQGLFHTWALQRTTSGSLVRLSPERSPPRGLDNTLLDKFPTFVYSSVKYLREEKSCSLECAICLLEFEDDSMLRHLTICCHVFHQECIDLWLESHKTCPVCRTDLDLHPNQTAKQGDNDNDNENNNNNNVDVDEGMMQLPCDAIHIDVGEEERDTVGEITEAQINANCQHDCENTSMPRGEEPRFSKSHSTGHSIVMIRGEEKDNPKYTLRLPEHVIRGGHNSSKSCTTYNEMTLAEPTPCSNCGFVKPVVASSSLAHAQDH* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3937 308 PANTHER RING-H2 FINGER PROTEIN ATL29 6 279 - -
Psa2g3937 308 CDD RING-H2_EL5_like 105 148 - -
Psa2g3937 308 SUPERFAMILY RING/U-box 82 155 - -
Psa2g3937 308 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Psa2g3937 308 Pfam Ring finger domain 105 148 IPR001841 -
Psa2g3937 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 153 IPR013083 -
Psa2g3937 308 SMART ring_2 106 147 IPR001841 -
Psa2g3937 308 PANTHER RING FINGER DOMAIN-CONTAINING 6 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3937 Psa-Chr2 412254499 412256037 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3937 20 272 Rapid Response to Elicitors AT2G35000 33.712 8.11e-39 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3937 - - gmx:100815505 306.605