Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3934 ATGGAAAATTTAAACACATCATCATCAACTAGCTGGTTATCTGATTTGATGTTGGATGAAATGGAAATGGAGGGTTGTGATTTGTTCCGACAAAATTTGTTTGATGATGAAGATTTATTCTCAGATGACATAGCAAGTGTTCTTCAACATCAACAACAACAACAACCTTTGTCTTGTGAAAGCTATGTTTCTTATCCTTTAGAAAGATCCAACAAGAAGTTGAAAACCAAAAACACTTTGCAAGATATTTCAAATTCCCATGTTTCTTCTCATTCCTCCACCACTAATTCTCAAATTTTGTCTTTTGAGAACACAACCACTACTCACTTTCATGCTTTTGATTGTACCTTAAACACAAAACATAATAATAATAATAAAGGTCATATCATAGCAGAGAGAAAGCGAAGAGAGAAACTTAACAAGAACTTAATTGCTTTAGCTGCTCTTATTCCTGGATTAAAGAAGATGGACAAGGCTTCAGTGCTGGGAGATGCTATAAAGTACATGAAAGAGCTCCAAGAACGTTTGAAGGTATTAGAAGAACAGAATAAGAATAGTACTGTTGAGTCTGTACTGACGGAAAACGAGCCGCAGCTAATTTATGAGTCTGTAGCGACGGACAAAAAACCGCGGGTAATTCATGATTCATGGAGTGATGATGGTTCTGAATCCCTCTCGCATGTGGATGCCAGAGTTTTGGACAAAGATGTTCTCATGAGGATTCTCTGCCAAAAGCAAAAGGGTGTTTTGATCAAATTATTGGACGAGATTCAAAAGCTTCATCTCTTGGTTGTTAATAGCAGTGTCCTATCTTTTGGAGGTTCTACTATCAACATAACCATTGTTGCTAAGATGGAAACGGGGTACAACTAG 873 0.3688 MENLNTSSSTSWLSDLMLDEMEMEGCDLFRQNLFDDEDLFSDDIASVLQHQQQQQPLSCESYVSYPLERSNKKLKTKNTLQDISNSHVSSHSSTTNSQILSFENTTTTHFHAFDCTLNTKHNNNNKGHIIAERKRREKLNKNLIALAALIPGLKKMDKASVLGDAIKYMKELQERLKVLEEQNKNSTVESVLTENEPQLIYESVATDKKPRVIHDSWSDDGSESLSHVDARVLDKDVLMRILCQKQKGVLIKLLDEIQKLHLLVVNSSVLSFGGSTINITIVAKMETGYN* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3934 290 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 186 IPR036638 GO:0046983
Psa2g3934 290 Gene3D - 116 188 IPR036638 GO:0046983
Psa2g3934 290 Pfam Helix-loop-helix DNA-binding domain 128 173 IPR011598 GO:0046983
Psa2g3934 290 SMART finulus 129 178 IPR011598 GO:0046983
Psa2g3934 290 Coils Coil 162 189 - -
Psa2g3934 290 PANTHER BHLH TRANSCRIPTION FACTOR 8 290 - -
Psa2g3934 290 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 172 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3934 Psa-Chr2 412150540 412151934 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3934 119 290 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 49.711 1.87e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa2g3934 HLH 7.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3934 - - mtr:MTR_5g014560 243.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3934 2 412150540 412151934 Psa4g1866 4 134413968 134418917 PCT