Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3933 ATGGAAGTTGCAGCTACCAAAATGACACCAAATGATGAGTCATGGACAAGTTGGTTGTGTGATTTGGATCCAGAAGATTACAAAATCATCAATGACATAAACATAGTACCTTTGTCACAAGACCGTGACATCTTGCCACAATCTTTGTCCAGTGGTAGTCATTGTTCTCACACAACCTCAAGTACTATGAGTAATTCTTCAGGAGATGTTGTTAACAGCTTTGAGAGACCTATAAAGACACTCAAGACTAATAACCCTTCAAACATAGGGTCTCATTCCTACATTCTTTGTTTCAACAATCCAGAACCAGAACCAGAACTAGAACCAAAAGGTAAGATTTTGAATAATGGGAAGTATTTAACCTCAAATCAGAAAAAGGAACCTAAACGAAGTATTCTAGAGAGCAAAAAGACTGATTCAGTAACAAAACATGCTCAAGATCACATAATTGCTGAGAGGAAAAGAAGAGAAAAACTTAGTCAACAGTTCATAGCTCTTTCAGCACTGATTCCAGATTTGAAAAAGATGGATAAGGCTTCTGTGTTAGGAGATGCAATAAACCATGTGAAACAGCTTCAAGAACAAGTGAAGATATTGGAACAGAAGAACCAAAGGAAAAACATTGAGTCTGTGGTTTATGTTGAGAAGACAAAATCATGTTCTTCAGATGAAGATGTTTCAGTTTCAGACACTTCCTCGAATTCTGGAAATGGTGGTAATTGTTGTCACCCGAATCGGTCACTGCCAGAAGTTGAGGCAAGAGTGTCAGAGAAAAACGTGCTGATAAGAATTCACTGTGAGAAAGAAAAAGGTGCGTTGATGAAGATAATCCAAGTGATAGAGAATCTTCATCTTTCTGTCACAAGCAATAGTACCTTGCTTTTTGGAACCACGAAACTTGACATAACCATCATAGCTGAGATGGATAATGAATTCAGGCTAAGTGTGCAGGAGCTAGTTAGAACCATTCGAGTTGGACTGTTGCAATTCATGTAG 996 0.3805 MEVAATKMTPNDESWTSWLCDLDPEDYKIINDINIVPLSQDRDILPQSLSSGSHCSHTTSSTMSNSSGDVVNSFERPIKTLKTNNPSNIGSHSYILCFNNPEPEPELEPKGKILNNGKYLTSNQKKEPKRSILESKKTDSVTKHAQDHIIAERKRREKLSQQFIALSALIPDLKKMDKASVLGDAINHVKQLQEQVKILEQKNQRKNIESVVYVEKTKSCSSDEDVSVSDTSSNSGNGGNCCHPNRSLPEVEARVSEKNVLIRIHCEKEKGALMKIIQVIENLHLSVTSNSTLLFGTTKLDITIIAEMDNEFRLSVQELVRTIRVGLLQFM* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3933 331 Gene3D - 141 213 IPR036638 GO:0046983
Psa2g3933 331 MobiDBLite consensus disorder prediction 123 148 - -
Psa2g3933 331 CDD bHLH_AtNAI1_like 144 216 - -
Psa2g3933 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 192 IPR011598 GO:0046983
Psa2g3933 331 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 11 328 - -
Psa2g3933 331 Coils Coil 182 209 - -
Psa2g3933 331 SMART finulus 149 198 IPR011598 GO:0046983
Psa2g3933 331 PANTHER BHLH TRANSCRIPTION FACTOR 11 328 - -
Psa2g3933 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 210 IPR036638 GO:0046983
Psa2g3933 331 Pfam Helix-loop-helix DNA-binding domain 147 193 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3933 Psa-Chr2 412007768 412009748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3933 145 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 49.733 9.85e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa2g3933 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3933 - - gmx:100816024 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3933 2 412007768 412009748 Psa4g1867 4 134579308 134581205 PCT