Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3927 ATGGCTCTTATTAACAATAATCAAGATTCCAATAACTCAAATCTCCACCTTGTTCTAGGCCTATCTTTAACTACTCCAAAGGAAACAACCACCACCACAACCACCACCACCACCGCCACCGTGAATCCCTATTATTCCTCTTCCAACGAGCCTTCCTTAACGTTGGGACTCTCCGGTGAGAGTTATAACCCTCCAAAAAATAAAACCTATGGCGAGGAGCTTTCGAGACAAACTTCTTCACCTCACAGTGTTACTGTTTCGTCGTTCTCAAATGGGAGAATACTTCACGTGAAAAGGGAGAGAGACGAAGAAGAAGACATAGTAGAAGAAGAAGAGAGAGTTTCTTCAAGAATAATCAGCGATGAAGATGAAGATGGAACAAACGCCAGAAAGAAACTTAGGCTCACCAAAGAACAATCTCTATTACTTGAAGAAAGCTTCAAATTACACAGCACTCTCAATCCTAAACAAAAACAAGCTTTAGCGAAACAATTGAGCCTAAGACCACGACAAGTTGAAGTGTGGTTCCAGAATCGGAGAGCCAGAACAAAGTTGAAGCAAACAGAGGTAGACTGTGAGTTTTTGAAGAAATGTTGTGAAACATTAACAGATGAAAACAGGAGGCTAAAGAAGGAGCTTCAAGAGCTGAAAGCATTGAAACTATCTGCACAACCTTTATACATGCCTATGCCTGCAGCAACTCTGTCCATCTGCCCCTCCTGCGACCGGCTCGGCGGCCGCGTGGCAGAAGGTGGTGGTTCGAATAAGAAGATCATCACTGCTTTTACTATGGCTCCTAATTCTCACTTTTATAATCCTTTCAACCATCCTTCTTCTGCTACATGTTAA 849 0.4264 MALINNNQDSNNSNLHLVLGLSLTTPKETTTTTTTTTTATVNPYYSSSNEPSLTLGLSGESYNPPKNKTYGEELSRQTSSPHSVTVSSFSNGRILHVKRERDEEEDIVEEEERVSSRIISDEDEDGTNARKKLRLTKEQSLLLEESFKLHSTLNPKQKQALAKQLSLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKLSAQPLYMPMPAATLSICPSCDRLGGRVAEGGGSNKKIITAFTMAPNSHFYNPFNHPSSATC* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3927 282 Pfam Homeodomain 130 184 IPR001356 GO:0003677
Psa2g3927 282 SMART halz 186 229 IPR003106 GO:0006355|GO:0043565
Psa2g3927 282 CDD homeodomain 130 187 IPR001356 GO:0003677
Psa2g3927 282 ProSitePatterns 'Homeobox' domain signature. 161 184 IPR017970 GO:0000981|GO:0006355
Psa2g3927 282 Coils Coil 280 282 - -
Psa2g3927 282 Pfam Homeobox associated leucine zipper 186 220 IPR003106 GO:0006355|GO:0043565
Psa2g3927 282 Coils Coil 192 222 - -
Psa2g3927 282 SUPERFAMILY Homeodomain-like 122 187 IPR009057 -
Psa2g3927 282 Gene3D - 123 191 - -
Psa2g3927 282 SMART HOX_1 128 190 IPR001356 GO:0003677
Psa2g3927 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 14 280 - -
Psa2g3927 282 PANTHER - 14 280 - -
Psa2g3927 282 ProSiteProfiles 'Homeobox' domain profile. 126 186 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3927 Psa-Chr2 411648498 411650374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3927 11 280 Homeobox Transcription Factor Family AT4G37790 58.571 3.66e-88 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa2g3927 Homeodomain 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3927 K09338 - gmx:100795135 307.76