Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3925 ATGGGAAGAGCTCCTTGCTGTGACAAAGCCAATGTCAAAAAAGGTCCATGGTCACCTGAAGAAGATGCCAAACTCAAATCTTACATAGAGCAGAATGGTACTGGTGGAAATTGGATAGCTCTTCCTCAGAAAATAGGACTTAAGAGATGTGGAAAAAGCTGTCGTCTTAGATGGTTAAATTATCTTCGACCCAATATCAAACATGGTGGTTTCTCTGAGGAAGAAGATGATATCATCTGTAGTCTCTATGTTAGTATTGGAAGCAGGTGGTCGATCATAGCAGCGCAGTTACCGGGACGAACCGACAACGATATAAAGAACTACTGGAACACTAGGCTGAAGAAGAAGCTTCTTGGAAAACAAAGGAAGGAGCAACAAGCTCAAGCTCAACGAGCTCGCCGAGTTAGCAACATGAAACAAGAGATGAAAAGAGAAACTGATAATCAGAATTTGATGGCAGCAGCAGCAGCTTCTGGTGTTAATACTCCTTATTGGCCTTTAGAGTATTCTGTTCATCCCATGCCAGTTTCAAATTCATCCATTATTGACTATGATCTCAACAACCAAACTTCCTTCACAAGCATGCTTCATCATCCAACCATAATGAACATGACAACAAACCCTTTATCCATGGTGAGTAATGCAAACAATATATTTCAAGGGTTTGAAAATTTTCCAAGTGATTTAAGTGAGCTTGTATGTGAGAATCAACAAGTAATGAATAGAACAATGGATGGTTTTTATGGAATGGAATCCATAGATATGAGCAATGGTGGTGGCAGCACAATCACAACAACTTCAACAGAAAGCAATAGTTGGGGAGACATGAACTCTTTGGTTTATTCACCTTTGGTTTCTGACTATGAAGCTTGTTGTCAACAAGGATCAATCATTCCTCAAGATGTTGCTGTTTTTGAAGAGTCTAGGTATTTTGGAACGCAAATGCAATAA 951 0.3954 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDDIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQAQAQRARRVSNMKQEMKRETDNQNLMAAAAASGVNTPYWPLEYSVHPMPVSNSSIIDYDLNNQTSFTSMLHHPTIMNMTTNPLSMVSNANNIFQGFENFPSDLSELVCENQQVMNRTMDGFYGMESIDMSNGGGSTITTTSTESNSWGDMNSLVYSPLVSDYEACCQQGSIIPQDVAVFEESRYFGTQMQ* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3925 316 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 202 296 - -
Psa2g3925 316 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 1 194 - -
Psa2g3925 316 CDD SANT 71 113 IPR001005 -
Psa2g3925 316 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Psa2g3925 316 MobiDBLite consensus disorder prediction 119 144 - -
Psa2g3925 316 SMART sant 67 115 IPR001005 -
Psa2g3925 316 SMART sant 13 64 IPR001005 -
Psa2g3925 316 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Psa2g3925 316 PANTHER OS09G0431300 PROTEIN 202 296 - -
Psa2g3925 316 PANTHER OS09G0431300 PROTEIN 1 194 - -
Psa2g3925 316 CDD SANT 16 62 IPR001005 -
Psa2g3925 316 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Psa2g3925 316 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Psa2g3925 316 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Psa2g3925 316 Gene3D - 7 68 - -
Psa2g3925 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Psa2g3925 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Psa2g3925 316 Gene3D - 69 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3925 Psa-Chr2 411421877 411423649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3925 1 282 MYB Transcription Factor Family AT3G49690 50.000 6.21e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa2g3925 Myb_DNA-binding 3.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3925 K09422 - gmx:106795158 398.667