Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3912 ATGCCTATGTATCAGCCTTCTATGGTTGTGGGTTTTGAGGGTGGTGGTGATGGTCAGATTCTAGATCTGGACACCGCCGTGAAAGATGGTGTTTTGGGTGGTGGGGTTGTGGGAAGTGGTGGTGTTGGTGTTGGTGGTGAGAAATTAGATCTGAGAAAAATGATTCAAGAGCTTGAGTTATGTGAAGTACCAAGTGTTTTCATTTGTCCAATCTCTCTTGAACCAATGCAAGACCCTGTTACACTTTGCACTGGACAAACCTACGAGAGGAACAACATTCTTAAATGGTTTAACCTAGGACACTTGACATGTCCCACTACTATGCAAGAGCTTTGGGATGATTCCATCACTCCAAACACAACGCTTTACAGACTCATTTACACTTGGTTCTCTCAGAAGTATTTGTTGATGAAGAAACGCTCTGAAGATGTTCAAGGAAGAGCTTCTGAGCTTGTGGATACACTCAAGAAGGTCAAGGGTCAAGCTCGTGTTCATGCTTTGAAGGAGCTTCATCAAGTTGTGGCTTTTCATGCCACTGCTCGTAAGTCTGTCATTGATGAAGGTGGTGTTTCTGTTTTGTGTTCTTTACTTGGTCCTTTTACTTCATATGCTGTTGGTTCCGAAGTTATTGGTATTCTTGTTAGTTTGACACTTGATTCTGAATCCAAAAAGAATCTTATGCAACCTGCTAAGATTTCGTTGATGGTTGATATCTTGAATGAGGGTTCAATTGAGACCAAAATCAATTGCACGCGGTTGATTGAATCGTTAATCGAGGAGAAAGATTTTCGGTCCGAGATTATCTCCAGCCATAGTCTATTGGTTGGTTTGATGAGGCTTGTCAAGGATAAGAGACATAGCAATGGAATCTGTCCTGGATTAAGCCTCCTCAAAACAGTGTGTTTCTATAAAGAAGTTAAGATTTTGTTAGTTAGCATTGGTGCTGTTTCTCAATTAGTCGAATTGTTGTCTGGTATGGACCATGATTGTTTGGAATTAGCGCTTTGTGTTTTGGATTCGTTGTCGTCCATACCCGAAGGCAGAGTCGCTTTGAGGGATTGTGTCAACACGATACCTATCATGGTGAGGTTTTTGATGAGGATCTCAGAAACATGCACTCAGTACGCGTTGTCGATTCTGTGGTCTGTTTGCAAGCTTGCGCCGGAGGAGTGTTCGGCGATTGCCATCGACGCAGGGCTTGCTGCGAAACTTCTTCTAGTGATTCAAAGTGGTTGCAATCCAATACTAAAACAACAATCCGCCGAGCTTTTGAAACTGTGTAGTTTGAATTATTCAGATACTATCTTCATTTCCAAGTGCAAGCTTACAAGAACCATCCAATGA 1344 0.4219 MPMYQPSMVVGFEGGGDGQILDLDTAVKDGVLGGGVVGSGGVGVGGEKLDLRKMIQELELCEVPSVFICPISLEPMQDPVTLCTGQTYERNNILKWFNLGHLTCPTTMQELWDDSITPNTTLYRLIYTWFSQKYLLMKKRSEDVQGRASELVDTLKKVKGQARVHALKELHQVVAFHATARKSVIDEGGVSVLCSLLGPFTSYAVGSEVIGILVSLTLDSESKKNLMQPAKISLMVDILNEGSIETKINCTRLIESLIEEKDFRSEIISSHSLLVGLMRLVKDKRHSNGICPGLSLLKTVCFYKEVKILLVSIGAVSQLVELLSGMDHDCLELALCVLDSLSSIPEGRVALRDCVNTIPIMVRFLMRISETCTQYALSILWSVCKLAPEECSAIAIDAGLAAKLLLVIQSGCNPILKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3912 447 SUPERFAMILY ARM repeat 151 432 IPR016024 -
Psa2g3912 447 SUPERFAMILY RING/U-box 58 133 - -
Psa2g3912 447 SMART Ubox_2 66 129 IPR003613 GO:0004842|GO:0016567
Psa2g3912 447 ProSiteProfiles U-box domain profile. 62 136 IPR003613 GO:0004842|GO:0016567
Psa2g3912 447 CDD RING-Ubox_PUB 67 109 IPR045210 -
Psa2g3912 447 Gene3D - 136 440 IPR011989 -
Psa2g3912 447 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 38 446 - -
Psa2g3912 447 Pfam U-box domain 63 133 IPR003613 GO:0004842|GO:0016567
Psa2g3912 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 135 IPR013083 -
Psa2g3912 447 PANTHER WDSAM1 PROTEIN 38 446 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3912 Psa-Chr2 410199339 410202118 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3912 1 447 U-box Gene Family AT3G49810 74.000 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3912 - - gmx:100779827 765.763