Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3903 ATGGGTGCTCCTAAGCAAAAATGGACTGCAGAAGAAGAGGCAGCTCTGAAAGCCGGAGTAGTCAAATACGGGGCTGGAAAATGGCGAACCATTCTTACCGACCCGGATTTCAGCACCATTTTGCGAATGCGTTCAAATGTAGATCTCAAGGATAAATGGAGGAACATAAATGTGACAGCAATATGGGGGTCCAGGCAGAAAGCAAAACTTGCACTTAAAAAGAACCTACCTCCTCCTAAATCTGAAAATAACCACGTAACCTCGAATGCCATAGTTCCGTATAATCAAGAAGTTGCTGCTGCTAAGCCTCTAACAGTTTCTGGTGGAACATCTACTTCCAAAGAACAAATACCAAGATTGGACAACCTTATATTAGAGGCTATTGTCAAGTTGAAGGAGCCAAAGGGTTCTGACATTTCCACCATTGCTGCTTTTATAGAGGATCAATACCGGTCTCCACCAAACCTCGTAAAGTTACTTTCATCTAAACTGAAGCATATGGTGGCAAGTGGTAAATTAATGAAGGTAAATCAGAAATACAGGATTGCAACAAATTCTTCAAAAATATCTGAGAAAAAAAGATGCTCTTCGTTGATGCTCCTCGAAGGGAGGCCAAAAGATTCTCCAAAAGCAGAGAAGGCTGATGCCAACATCCTTTCAAAATCCCAAATTGATGTCGAGCTTTTAAAAATGAAAGGTGTGACAGCTCAAGAGGTGGCAGCAGCAGCTGCAAAAGCAGTTGCAGAGGCAGAAGCTGCCATTGCTGAGGCTGAGACAGCAGCACGAGAGGCAGAGGCTGCAGAAGCCGAAGCAGAGGCTGCTCGAGTGTTTGCAAAAGCAGCACTGAAGGCACTAAAATGCAGAAGACTTAATATTTGA 879 0.4357 MGAPKQKWTAEEEAALKAGVVKYGAGKWRTILTDPDFSTILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLPPPKSENNHVTSNAIVPYNQEVAAAKPLTVSGGTSTSKEQIPRLDNLILEAIVKLKEPKGSDISTIAAFIEDQYRSPPNLVKLLSSKLKHMVASGKLMKVNQKYRIATNSSKISEKKRCSSLMLLEGRPKDSPKAEKADANILSKSQIDVELLKMKGVTAQEVAAAAAKAVAEAEAAIAEAETAAREAEAAEAEAEAARVFAKAALKALKCRRLNI* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3903 292 PANTHER SINGLE MYB HISTONE 4 1 291 IPR044597 GO:0003691
Psa2g3903 292 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 116 191 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa2g3903 292 SUPERFAMILY Homeodomain-like 2 66 IPR009057 -
Psa2g3903 292 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Psa2g3903 292 SUPERFAMILY "Winged helix" DNA-binding domain 114 188 IPR036390 -
Psa2g3903 292 PANTHER TELOMERE REPEAT-BINDING FACTOR 2 1 291 - -
Psa2g3903 292 Coils Coil 240 274 - -
Psa2g3903 292 Gene3D - 2 59 - -
Psa2g3903 292 CDD SANT_TRF 6 57 - -
Psa2g3903 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Psa2g3903 292 Pfam linker histone H1 and H5 family 118 177 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa2g3903 292 SMART sant 4 59 IPR001005 -
Psa2g3903 292 Gene3D - 112 214 IPR036388 -
Psa2g3903 292 SMART h15plus2 114 179 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa2g3903 292 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3903 Psa-Chr2 409767082 409772316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3903 1 288 Single Myb Histone (SMH) Gene Family AT5G67580 53.741 9.60e-76 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa2g3903 Linker_histone 7.5e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3903 K09422 - gmx:778165 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3903 2 409767082 409772316 Psa4g1908 4 138277761 138289287 PCT