Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3900 ATGAGAGAAGGTTTGAGATCTTGGACTCGGTCAGGGAAGGTTTCCAGTGATGGAAAGGTTGTTCATAAGGGAAGGGTTTGTGTGAAGAATGCTAGTGATAGTTTTGTTTTGGGTGATGAGGGTTTCCAGGCACCTTTGTTGATTGAGAAGAAAGACAATGATAATTTGGTTTCGTGTGATGAGGGTTTAGAAGCACCTACCTTGTTGATTGAGAAGAAAGACGAGGATTTAGTTTCCGGGGATGATGGTTTACCTACCTCGTTGATTGAGAAGAAAGACGAGGATTTAGTTTCGGGGGATGAGGGTTTAGAGGCACCTACCCCGTTGATTGAGAAGAAAGACGAGGATTTAGTTTCGGGGGGTGAGGGTTTAGAGGCACCTACCTTGTTGATTGAGAAGAAAGACGAGGTTTTAGTAGAGGGTTTAGAGGCACCTACCCCGTTGATTGAGAAGAAAGACGAGGATTTAGTTTCGGGGGGTGAGGGTTTAGAGGCACCTACCTTGTTGATTGAGAAGAAAGACGAGGTTTTAGTTTCGGGGGATGAGGGTTTAGAGGCACCTACCTCGATGATTCAGAAGGAAGACAAGGTTGAATGTGCTGGTGAAGTTGACTGTGTTGGCGAAGTTGAATGTGCTGTGAAAAAAACACTTGACTTGGATTTGAATGCCAGTCCAAGTGTAGATATTGACTTAGCTGAGAATGAGAGCTGTTTGGATTTAAAGTTGAACATGAGTGGAAATGTTGACTTAGCTGAGAATGTGAACAGTAGCCCTAGGAGTTGTTTAAAAGATGGTGGTATTAATGTAGAAGCTGAGGATGATTGGGAGGAGAGTGAAGGGTTGAGTGGGGCTAGAGTATTGCGGTTAAGGTTAAAGAGGGAAGACGACAAAAAATCTGATAATGGAGGGAATGACGTTGCTGGGAATATTGGAGAACCTGGTGGGTTTGACGAGCTTAAAGAAGCTGATGGGATTTTGACTGATGGTAACGAGATTGAAGGAGTTAAGGTGAAAATGGGAGGGAAAGGCAAGAGGAAATTGAAACGGAAGCGTGGGAGGCCTCCGAAAACGGAGATAAAAGAGAAAGATGAATTTGTTTACCAGCACCAGCCACCGCGTAAGGGTTGGGAGGCCTCGGATCAGCCACTACGTAGGGTTGGGAGGCCTCCGAAAACAAAGATAAAAGAGAAAGATGAATTAGTTAATCAGCCACCTCGTAGGGTTGGGAGGCCTCGGAAAACAGAGATAAAAGAGAAAGGTCAATTAGTTGATCAGCCACTGAGTAAGCTTGGGAGGCCTCTCAAAGAAGTTATAAAAGAGGATGATCAGTTAGTTCAGTCACCACGTAAGCGTGGAAGACCTCCCAAGACCGACCAACAAAAGTATCCCATTACTGTGTCACATAATAGTAAAGGAAAGGCAAGCCATGAAAATGGGAAAAAAGTTTCCAGTAAAAAGTTTAAAAAGAAGAGGACATCAAATACTGTGAATGCACCTGCTGCTAAACAAAGAAAAAGACGTGAACAAAAGCAGTTGGTGAGTAATCAAATAATGGCATGTCTCTCGGATGCAGGATGGACTGTTGATCATAGACCTAGAAAAAGCGGAAGAGATTATTTTGATGCAGTATATGTTTCTCTGGATGGAAAAACACATTGGTCAATTACCTTGGCGTACAAGAGGCTTAAAGAGCGTTATGAAGCAGGGGATGGTGAAGGTAAGCTGTACAGACCAGGGTTCAAATTTACACCAATACCAGAGGAAGATTTCAAGTTACTGACTAGAGTAGTTACCAAGAAAAGATGTTCAGTTAAATGTGTGCCATTTGAAGGGAAGGTTGGAAAGAATGTTGATGGGGTCAATCGAAAAGAGAAAAAAATAAAACCAGGTTCTGGTGCAGGCAAGGGTAAGTCAGTGAAAGGGAAAATGAAAAGGAAACGATCACTTGCCGAGGATGGCGATACAGATTTTAAATCACCTAACAGGCTGCCGGTTCTGGTCAGGGATCGTAAGCGGCACAAAACACAGAACAAGACGCGAGGTGCTCTGTTGGTTCGTGATGCTACGGAAGAGGTAGATTCAGAAATTAACGGATATGTGCCATACAGTGGAAAACGAACTATACTTGCCTGGATGATTGATTTGGGCACAATCCCTCAAAATGGGAAGGTCTATTATATGCAAGACAAGTTGGAAATTGCTCCATTGGAAGATCCTAATGATGATACATGTGGTATTTGCGGAGATGGTGGAGACCTGATGTGCTGTGATGGTTGCCCGTCAACGTTCCATAAAAGCTGTTTGGATATAAAAAAGTTTCCATCTGGTGACTGGCACTGCATTTACTGTTGTTGCAAATTTTGTGGTTTGGTTGGTGGAAGTTCAAACCGAAGTGTTGTCAATGACGAGTTTACTCTGCCTGCATTGCTCACATGCCATTTATGTGAGGAAAAATTTCACAAATCCTGTATTGAGGCAAATGGTGGTAAGACTGATGATTCCGGGGATGCTGTATTTTGCGGAAACAAATGTCAAGAGTTATCTGAGGGACTTGAAAGGCTTCTTGGGGTTAAACATGAAATTGAAGATGGGTTTTCTTGGTCTTTTATTTGGCGATCAGATGTTGGCGTTGATGCTTCTCTGACAAAACCTCAGCTGGTAGAGTGTAATTCTAAGCTGGCTGTTGCATTATCAATAATGAATGAGTGCTTTATGCCATTTATTGATCATAGAAGCGGGACCAATCTGATCCACAGTATTGTATATAATTGTGGGTCAAACTTCAAGCGCCTGAACTATAGTGGGTTTATTACTGCGTTTCTAGAGAGAGGTGATGAGATCATATGTGTTGCATCTATCAGGATCCATGGGAACCAACTTGCAGAGATGCCATTCATTGGAACCCGCTATATGTATAGGCGACAAGGAATGTGCCGTCGGCTTCTAAATGCCATCGAATGGGCACTCGATTCTTTACATGTTGAGTTATTAATCATACCAGCTATATCAGAACTCAAAGAAACCTGGACCTCTGTTTTTGGGTTTGAGCCACTTGATCAAACAAGCAAGCAAATAACAAAGAGCATGAATCTGTTGGTGTTCCCTCACGTAGATATGCTACAGAAGAAGATATCAAAGCATGAATTTACTAATGAAAATTTGATTCCTACTGAAGTTTCCAATCATATGAAGAATCATACTACATGCAAGGTAGCAAATCGGGACGGGAAAGACTCAACTGGATCTGATTGTTGCAAGAAAATTGACATCTCATTGAATAACACACCTGACATTACTAGCGACGTACAGAACATTAAATCTACAAAAGATGTCACATCTCCAGATGCATGTCAGACTGTTCATGGACAATTGGTTGTGGACAACAAAAGCACTGAAAATGCCGGTGAGCGTGTGGCTGATTCTTGTTGCCAAGTTGGAGATTACGATGGTGCACTGTTGGAGGTTACTGAAAATTGTTCAAACAAGGTCAAAGTAACAACTGACGTTGGTTTAAATAACATCAGTGCTGAAAAATCTGCACTCTCAGGGGCAGAAAATATTCCTATTGACTCACAAGTTGTGTTTAGGACAAGGGAATCAAAATATTCTGCTGAGAGTAACCATGATTCACACAGGATTTCTGACAGTTGTGAACTGAGATTTAAGACCGACTGTGCTCAATCAGACGGTATTGCATCAGAAGAAGTACATACTCAATTCGACAATGGTTGCAGCACTCATTCTGTACCAGATGGTGATATTGCCTCTGGTGTAGCAGGTCTCCTAACCAACATCTTGATGAACACTGAATCGCAGAATATTACCCAAGATTTGCCTGTTAGTTGTGAGAACAATTCAAGTGTTAGTGTGCCAAATGCTGATGAAGCAGAACTATGTTATTCCAAAACCATTGATCTCCAAACAAACAAAAATCCTGGAGATTGTCAATCTATACTAGTGTCTTCCGGTATTTGTAAGAAAATTGCAGATGGTGTCAATGAGACGAATAAAGCATCCAGTGAAGCTGATACTGTTTTTCTTCCTGCTGATATTGAAAATATTACCAAACATTTTCCTGTTAATTGTGAAAACAATTCTAGTGGTCATGGTTCGCCAAATGCTGATGAATCCGAACTATGTTCTTCCAAAACAATTGATCTCCAGACAAACAAAATTCCTAGATATTGCCAATCCATACTAGAATCTTCAGCTGTTTGTGAGAAAATTGCAGATGGTGTCAGAGAGAGGAATAAAAAGCCCAGTGCTGCTGATGCCGATGATCTTCCAATTGATATTGAAGTTGTTCCCAATAACAAGCCTGAGATAAAGGAGTCTTCAGAGCCAGTGAAGCCTGATTTGCGGGTTGATCAAACTGAACAGAGTGAAACTAACATTTCTTCAGGTGCGGCTCTGCACTGTACATCTGCTGGCAGTACTTCATGTGGTAGTGCTGACGGCTTAGTCTGTCAAATCAAGACAGCTGAGTAG 4488 0.4189 MREGLRSWTRSGKVSSDGKVVHKGRVCVKNASDSFVLGDEGFQAPLLIEKKDNDNLVSCDEGLEAPTLLIEKKDEDLVSGDDGLPTSLIEKKDEDLVSGDEGLEAPTPLIEKKDEDLVSGGEGLEAPTLLIEKKDEVLVEGLEAPTPLIEKKDEDLVSGGEGLEAPTLLIEKKDEVLVSGDEGLEAPTSMIQKEDKVECAGEVDCVGEVECAVKKTLDLDLNASPSVDIDLAENESCLDLKLNMSGNVDLAENVNSSPRSCLKDGGINVEAEDDWEESEGLSGARVLRLRLKREDDKKSDNGGNDVAGNIGEPGGFDELKEADGILTDGNEIEGVKVKMGGKGKRKLKRKRGRPPKTEIKEKDEFVYQHQPPRKGWEASDQPLRRVGRPPKTKIKEKDELVNQPPRRVGRPRKTEIKEKGQLVDQPLSKLGRPLKEVIKEDDQLVQSPRKRGRPPKTDQQKYPITVSHNSKGKASHENGKKVSSKKFKKKRTSNTVNAPAAKQRKRREQKQLVSNQIMACLSDAGWTVDHRPRKSGRDYFDAVYVSLDGKTHWSITLAYKRLKERYEAGDGEGKLYRPGFKFTPIPEEDFKLLTRVVTKKRCSVKCVPFEGKVGKNVDGVNRKEKKIKPGSGAGKGKSVKGKMKRKRSLAEDGDTDFKSPNRLPVLVRDRKRHKTQNKTRGALLVRDATEEVDSEINGYVPYSGKRTILAWMIDLGTIPQNGKVYYMQDKLEIAPLEDPNDDTCGICGDGGDLMCCDGCPSTFHKSCLDIKKFPSGDWHCIYCCCKFCGLVGGSSNRSVVNDEFTLPALLTCHLCEEKFHKSCIEANGGKTDDSGDAVFCGNKCQELSEGLERLLGVKHEIEDGFSWSFIWRSDVGVDASLTKPQLVECNSKLAVALSIMNECFMPFIDHRSGTNLIHSIVYNCGSNFKRLNYSGFITAFLERGDEIICVASIRIHGNQLAEMPFIGTRYMYRRQGMCRRLLNAIEWALDSLHVELLIIPAISELKETWTSVFGFEPLDQTSKQITKSMNLLVFPHVDMLQKKISKHEFTNENLIPTEVSNHMKNHTTCKVANRDGKDSTGSDCCKKIDISLNNTPDITSDVQNIKSTKDVTSPDACQTVHGQLVVDNKSTENAGERVADSCCQVGDYDGALLEVTENCSNKVKVTTDVGLNNISAEKSALSGAENIPIDSQVVFRTRESKYSAESNHDSHRISDSCELRFKTDCAQSDGIASEEVHTQFDNGCSTHSVPDGDIASGVAGLLTNILMNTESQNITQDLPVSCENNSSVSVPNADEAELCYSKTIDLQTNKNPGDCQSILVSSGICKKIADGVNETNKASSEADTVFLPADIENITKHFPVNCENNSSGHGSPNADESELCSSKTIDLQTNKIPRYCQSILESSAVCEKIADGVRERNKKPSAADADDLPIDIEVVPNNKPEIKESSEPVKPDLRVDQTEQSETNISSGAALHCTSAGSTSCGSADGLVCQIKTAE* 1496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3900 1495 PRINTS AT-hook-like domain signature 348 358 IPR017956 GO:0003677
Psa2g3900 1495 PRINTS AT-hook-like domain signature 403 414 IPR017956 GO:0003677
Psa2g3900 1495 PRINTS AT-hook-like domain signature 446 456 IPR017956 GO:0003677
Psa2g3900 1495 MobiDBLite consensus disorder prediction 292 317 - -
Psa2g3900 1495 PANTHER PHD FINGER PROTEIN 12 737 1284 IPR042163 GO:0003714|GO:0045892
Psa2g3900 1495 PANTHER PHD FINGER PROTEIN 12 234 732 IPR042163 GO:0003714|GO:0045892
Psa2g3900 1495 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 737 1284 - -
Psa2g3900 1495 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 234 732 - -
Psa2g3900 1495 MobiDBLite consensus disorder prediction 1437 1469 - -
Psa2g3900 1495 CDD PHD1_AIRE 744 783 - -
Psa2g3900 1495 MobiDBLite consensus disorder prediction 354 370 - -
Psa2g3900 1495 MobiDBLite consensus disorder prediction 623 655 - -
Psa2g3900 1495 MobiDBLite consensus disorder prediction 433 457 - -
Psa2g3900 1495 SMART PHD_3 743 784 IPR001965 -
Psa2g3900 1495 SMART PHD_3 785 845 IPR001965 -
Psa2g3900 1495 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 732 841 IPR013083 -
Psa2g3900 1495 MobiDBLite consensus disorder prediction 378 422 - -
Psa2g3900 1495 ProSiteProfiles Zinc finger PHD-type profile. 741 786 IPR019787 -
Psa2g3900 1495 MobiDBLite consensus disorder prediction 1437 1457 - -
Psa2g3900 1495 SMART AT_hook_2 405 417 IPR017956 GO:0003677
Psa2g3900 1495 SMART AT_hook_2 383 395 IPR017956 GO:0003677
Psa2g3900 1495 SMART AT_hook_2 448 460 IPR017956 GO:0003677
Psa2g3900 1495 SMART AT_hook_2 348 360 IPR017956 GO:0003677
Psa2g3900 1495 SUPERFAMILY FYVE/PHD zinc finger 729 789 IPR011011 -
Psa2g3900 1495 MobiDBLite consensus disorder prediction 336 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3900 Psa-Chr2 409690466 409701208 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3900 509 756 PHD Transcription Factor Family AT4G14920 28.881 1.62e-20 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3900 - - cam:101502634 994.186