Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3899 ATGGGGAAGAAACAGCACAGTAAAGACCGAATGTTCATAACCAAAACAGAGTGGGCAACGGAATGGGGAGGTTTCAAATCCAAAGAAAATCGCACCGCTTTCAAACGTCTTCCTTTTTACTGCTGCGCACTTACTTTTACTCCGTTTGAGTTTCCAGTTTGTACACCTGATGGAAGCGTTTTCGATGTTATGCACATAACTCCATATATTGTAAAATACGGTAAACATCCTGTTACTGGGGCTTCATTGAAGCAGCAAGATCTCATTCCACTAACTTTTCACAAGAACTCAGAAGGAGAATATCACTGTCCAGTGCTAAACAAAGTTTTCACTGAGTTTACACACATTGTTGCAGTCAAGACTACTGGAAATGTCTTCTGCTATGAGGCTGTTAAGGAGTTAAACATCAAAACAAAAAACTGGAAGGAGCTCCTCACCGATGAGACATTTACTAGGGATGACCTTATAACTATTCAGAATCCTAATGCACTTGACCAGAAGGTTCTTCTGGATTTTGATCATGTTAAACAAAATTTGAAAATTGATGATGAAGAACTACAGAAAATGAGTTCAGATCCAACCTATAACATAAACATGTCGGGTGATATCAAGCAAATGCTTAAGGAGCTTGGAACTGAGGAAGGAAAGGAAACTGCATTGCACGGGGGAGGTGGCGGTAAGGCACAAAAAGAAAGGGCCGCTGCACTTGCTGCCATCTTAGCTGCAAGATCACAAGTTAAAGAAGATTCCAAATCGAATCCTGATGCAGCTCCTCAGGCACTCAGTATTGTAGATGCTGCATCTGCCTCAGTACATGGAAGAAGTGCAGCTGCTGCTAAAGCCTCATCAAGTGATAAAACTGCTGCCAGAATAGCTATGCATGTGGCTGGTGACAGGGCGCCAGTGAATGCGAAGCTGGTTAAAAGTCGTTACACTACTGGTGCTGCTTCCCGATCTTTCACTTCAACATCATATGATCCAGTTACAGAAAATGGTTATGAATATGTGAAAGTCGAGAGGAATCCAAAGAAGAAGGGATATGTACAACTGCATACAACACATGGTGATTTGAACATTGAGCTTCATTGTGATATAGCTCCCAGGGCATGTGAGAACTTTATCACACTTTGTGAGCGTGGATATTATAATGGAGTTGCTTTTCATAGAAGCATTAGGAATTTTATGATACAAGGTGGTGATCCTACTGGTACTGGTAGGGGTGGTGAATCGATTTGGGGAAAACCTTTTAAGGATGAACTCAACTCCAAATTAGTCCACTCCGGAAGGGGTGTGGTTAGCATGGCAAACAGTGGCCCACATACTAATGGTTCCCAGTTTTTCATCTTGTACAAATCTGCAAATCATTTAAACTTCAAACATACAGTTTTTGGAGGAGTAGTCGGTGGCTTGACTACACTAGCAGCAATGGAAAAAGTTCCTGTTGATGACAGTGACCGACCTCTGGACGAAATCAAGATAACAGGTGTCACAACTTTTGTCAATCCTTACACCGAACCTGATGAGGAAGAAGAGCAAGCAAATGCCAAAGAGAAGAATGCAAATGATGAAGAAAATGACAAGGTTGGCTCATGGTATAGTAATCCTGGAGCTGGAACATCTGAGTCTGGAGCTACGGGGGTGGGCAGCGGTGGTGTTGGTAAGTACTTGAAGGCTAGGAGTGTTCCAACCGAATCTGCTGCTGCTGCCGCCGTAGACACCGGTACAGCCGTTGTAGGAAAGAAAAGAAAAGCAGTTGTCAGTGGTGGATTTAAAGATTTTTCTGCATGGTAG 1791 0.4277 MGKKQHSKDRMFITKTEWATEWGGFKSKENRTAFKRLPFYCCALTFTPFEFPVCTPDGSVFDVMHITPYIVKYGKHPVTGASLKQQDLIPLTFHKNSEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKELLTDETFTRDDLITIQNPNALDQKVLLDFDHVKQNLKIDDEELQKMSSDPTYNINMSGDIKQMLKELGTEEGKETALHGGGGGKAQKERAAALAAILAARSQVKEDSKSNPDAAPQALSIVDAASASVHGRSAAAAKASSSDKTAARIAMHVAGDRAPVNAKLVKSRYTTGAASRSFTSTSYDPVTENGYEYVKVERNPKKKGYVQLHTTHGDLNIELHCDIAPRACENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTTLAAMEKVPVDDSDRPLDEIKITGVTTFVNPYTEPDEEEEQANAKEKNANDEENDKVGSWYSNPGAGTSESGATGVGSGGVGKYLKARSVPTESAAAAAVDTGTAVVGKKRKAVVSGGFKDFSAW* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3899 596 SUPERFAMILY RING/U-box 38 105 - -
Psa2g3899 596 Gene3D - 329 512 IPR029000 -
Psa2g3899 596 MobiDBLite consensus disorder prediction 503 527 - -
Psa2g3899 596 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Psa2g3899 596 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Psa2g3899 596 PANTHER RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 2 594 - -
Psa2g3899 596 SUPERFAMILY Cyclophilin-like 347 507 IPR029000 -
Psa2g3899 596 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 382 399 IPR020892 GO:0003755|GO:0006457
Psa2g3899 596 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 347 497 IPR002130 GO:0000413|GO:0003755
Psa2g3899 596 MobiDBLite consensus disorder prediction 509 525 - -
Psa2g3899 596 CDD cyclophilin_RING 347 505 - -
Psa2g3899 596 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 351 498 IPR002130 GO:0000413|GO:0003755
Psa2g3899 596 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Psa2g3899 596 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 594 IPR044666 -
Psa2g3899 596 Pfam U-box domain 39 90 IPR003613 GO:0004842|GO:0016567
Psa2g3899 596 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 361 376 IPR002130 GO:0000413|GO:0003755
Psa2g3899 596 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 387 399 IPR002130 GO:0000413|GO:0003755
Psa2g3899 596 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 430 445 IPR002130 GO:0000413|GO:0003755
Psa2g3899 596 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 445 457 IPR002130 GO:0000413|GO:0003755
Psa2g3899 596 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 458 473 IPR002130 GO:0000413|GO:0003755
Psa2g3899 596 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3899 Psa-Chr2 409500958 409507348 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3899 1 596 U-box Gene Family AT5G67530 75.667 0.0 907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3899 K10598 - gmx:100819923 989.949