Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3885 ATGGCTAACATGGATGGCAAATCACTCCTGAGTCCTAAGAATTCCATTCCCATACCCCCTCCTTCGCCTCAATCAGCAGCAACAGGTTATCCTTGCGAGTATGTGGTGATGAATAATTTAGCACCCAGACGGCGAAGCAGTTGTGTCCCTACTGCAACAAGAGATTTGTGGGAGCGTCTTTTCAATGAAGGTTATAAAGCCGATGTTCGCATTAATACTGATAACAGTGGCATTGTTTATGCTCATTCTAACATTATTGCGGTGGCTTCTCCTGTATTGGGAGGTATGCTGAAGCAAGCAAATCGTTCCAATCGATGGCGATCAATCTCAATTTTTGGGGTTCCACATGATGCAGTACGAGTTTTTATTCGATTCTTGTACTCTTCCTGTTACGAGAACGAAGAAATGAAGGAATTTGTCCTACATCTGTTGGTGCTGTCACATGTATATGCGGTCCCTCACTTGAAGCATGAATGTGAACAGAAGCTAGAATTGGGTTTACTCACCATAGATAATGTAGTGGATGTATTTCAACTTGCATTACTGTGTGATGCACCGCGACTCAGTCTCATTTGTCATCGTAAAATACTAAAAAACTTCAAAACTGTTTCGGAGTCAGAAGGATGGAAAGCAATGAAGCAGAGCCACCCGATTCTAGAAAAGGAACTTCTGGAATCAATGATCGAAGAAGAAAATAGTAAGAAGGAGAGGATCAGAAAAATGAACGAAAAAGAGGTCTATCTGCAATTATACGATGCAATGGAAGCTCTTGTTCACATATGTAGAGATGGTTGTCGAACTATTGGCCCTCATGATAAAGACTTCAAAGCAAACCAACAACCCTGTAGGTATACATCTTGCAAAGGGCTAGAACTGCTTGTTCGCCATTTTGCTGGTTGCAAGTTGAGAGCCCCAGGAGGTTGTGCCCATTGCAAAAGGATGTGGCAACTGTTGGAGCTGCATTCTCGACTCTGTGCTGATCCAAGTTCATGTAGAGTGCCTCTCTGCAGGAACTTTAGACAGAGACTAGCAAAACAAAGCAAGAAAGATGAAATTAGATGGACAATATTGGTTGAAAAGATCTTGAAAACAAGAGGAATTGGGATTGCACCATGCTTTCGGCCACTATGA 1131 0.4235 MANMDGKSLLSPKNSIPIPPPSPQSAATGYPCEYVVMNNLAPRRRSSCVPTATRDLWERLFNEGYKADVRINTDNSGIVYAHSNIIAVASPVLGGMLKQANRSNRWRSISIFGVPHDAVRVFIRFLYSSCYENEEMKEFVLHLLVLSHVYAVPHLKHECEQKLELGLLTIDNVVDVFQLALLCDAPRLSLICHRKILKNFKTVSESEGWKAMKQSHPILEKELLESMIEEENSKKERIRKMNEKEVYLQLYDAMEALVHICRDGCRTIGPHDKDFKANQQPCRYTSCKGLELLVRHFAGCKLRAPGGCAHCKRMWQLLELHSRLCADPSSCRVPLCRNFRQRLAKQSKKDEIRWTILVEKILKTRGIGIAPCFRPL* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3885 376 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 11 374 IPR044513 -
Psa2g3885 376 ProSiteProfiles Zinc finger TAZ-type profile. 241 339 IPR000197 -
Psa2g3885 376 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 4 11 374 - -
Psa2g3885 376 Gene3D Potassium Channel Kv1.1; Chain A 45 167 IPR011333 -
Psa2g3885 376 ProSiteProfiles BTB domain profile. 67 135 IPR000210 GO:0005515
Psa2g3885 376 SUPERFAMILY TAZ domain 244 344 IPR035898 -
Psa2g3885 376 Pfam TAZ zinc finger 252 336 IPR000197 -
Psa2g3885 376 Gene3D TAZ domain 242 364 IPR035898 -
Psa2g3885 376 Pfam BTB/POZ domain 59 163 IPR000210 GO:0005515
Psa2g3885 376 MobiDBLite consensus disorder prediction 1 24 - -
Psa2g3885 376 Coils Coil 221 244 - -
Psa2g3885 376 CDD BACK 169 229 - -
Psa2g3885 376 SUPERFAMILY POZ domain 46 163 IPR011333 -
Psa2g3885 376 SMART TAZ_2 244 337 IPR000197 -
Psa2g3885 376 Gene3D - 168 241 - -
Psa2g3885 376 SMART BTB_4 67 167 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3885 Psa-Chr2 408874745 408879673 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Psa2g3885 BTB 1.6e-10 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3885 - - lja:Lj2g3v1968190.1 591.652