Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3880 ATGGAACAGTTACTCGTTCAATGCGCCAGCGCCATCGAAACCAACAATGCGACACAAGCCCAACAATTCCTCTGGGTCCTTAACAACACCACACCCCAAGAAGGCGACTCCAACCAACGCTTAGCCGCAAGCTTCATTCGAGCTCTAACCACGCGAATTCTCGCCAAAACCGGTTGCTGCAAAGCGCTAGAACAAGAAGATACACAAACTGCGAACGGTTATAACAATCTTAACCATACTAACAGCCTCGCCATACAAACGCACAAATTCTCCGTTATTGAATTAGCCAACTTCGTCGATTTAACACCGTGGCATCGTTTCGGTTACACAGCCGCAAACTCCACCATTCTAGAAGCTACCAGAGGTTTTCCTGTTATTCACATTGTTGATCTGAGTTTAACACATTGCATGCAGATTCCTACACTAATCGACGCTATTGCTAATCGCGACGAAGTTCCTCCTTCCATCAAGCTCACCGTTGCAGTTCGAAACAGGAATGTTCATCTTCCAATTCCACCTTTGCTTGAACTTTCTTACGACGAATTAGGTTCGAAATTGGTTAATTTTGCTAAATCAAGAAACGTGAGGATGGAATTCAAAGCAGTTTCTTCGACATACGCAGACGGATTCGCTTCTTTAATCGAACACCTACGAAGGCAAGTCCAAGACTTAGTTTATAACAAAACTCATGAAGCGTTGGTAATAAACTGTCACATGATGCTTCATTATATTCCTGAAGAAACTCTATATACGAATATGAATACGAATAATGGTTCTTCTTCGCTGCGATCGATGTTTCTAGAAGCTCTGCGGAGTTTAGAACCGACGATTGTCGTTCTGGTCGATGAAGACGCGGATCTAACCTCGAGTGATTTAGTGACTAGACTAAGGTCTGCATTTAATTATCTTTGGATCCCTTTCGACACGGTGGACATGTTTCTACCGCGAGGGAGTAAAGAAAGGCATTGGTATGAATCAGATATTTGTTGGAAGATTGAGAATGTGATAGCATATGAAGGGGTTCAAAGAGTTGAGAGAGTTGAGGGTAAAGGTAAGTGGGAGCAAAGAATGAGAAATGCGCATTTTCAAGGGGTTTGTTTCAGTGAAGATTCGGTTATGGAGGTTAAAGGGATGATTGATGAACATGCAGTTGGATGGGGATTGAAGAAAGAAGATGAGTTTCTTTCGCTTACTTGGAAAGGACATAATGTCATCTTTGCTTCAGCTTGGTTACCTTCTTGA 1242 0.4267 MEQLLVQCASAIETNNATQAQQFLWVLNNTTPQEGDSNQRLAASFIRALTTRILAKTGCCKALEQEDTQTANGYNNLNHTNSLAIQTHKFSVIELANFVDLTPWHRFGYTAANSTILEATRGFPVIHIVDLSLTHCMQIPTLIDAIANRDEVPPSIKLTVAVRNRNVHLPIPPLLELSYDELGSKLVNFAKSRNVRMEFKAVSSTYADGFASLIEHLRRQVQDLVYNKTHEALVINCHMMLHYIPEETLYTNMNTNNGSSSLRSMFLEALRSLEPTIVVLVDEDADLTSSDLVTRLRSAFNYLWIPFDTVDMFLPRGSKERHWYESDICWKIENVIAYEGVQRVERVEGKGKWEQRMRNAHFQGVCFSEDSVMEVKGMIDEHAVGWGLKKEDEFLSLTWKGHNVIFASAWLPS* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3880 413 Pfam GRAS domain family 1 410 IPR005202 -
Psa2g3880 413 PANTHER SCARECROW-LIKE PROTEIN 32 1 411 - -
Psa2g3880 413 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 411 IPR005202 -
Psa2g3880 413 ProSiteProfiles GRAS family profile. 1 411 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3880 Psa-Chr2 408737799 408739335 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3880 1 412 GRAS Transcription Factor Family AT3G49950 55.000 3.47e-159 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Psa2g3880 GRAS 7e-91 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3880 - - mtr:MTR_3g053270 649.818